@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo1987: (2016-03-30 )
MKKIQFFDTTLRDGEQTPGVNFDVKEKIQIALQLEKLGIDVIEAGFPISSPGDFECVKAIAKAIKHCSVTGLARCVEGDIDRAEEALKDAVSPQIHIFLATSDVHMEYKLKMSRAEVLASIKHHISYARQKFEVVQFSPEDATRSDRAFLIEAVQTAIDAGATVINIPDTVGYTNPTEFGQLFQDLRREIKQFDDITFASHCHDDLGMATANALAAIENGARRVEGTINGIGERAGNTALEEVAVALHIRKDFYQAETNIVLNQFKNSSDLISRLSGMPVPRNKAVIGGNAYAHESGIHQDGVLKNPDTYEIITPALVGVDKNSLPLGKLSGKHAFNTRMEEMGYTLTEQEQKDAFKRFKQLADAKKEVTEEDLHALILGQSSESADDFELKHLQVQYVTGGVQGAIVRIEERDGALVEDAATGSGSIEAIYNTINRLMKQDIELTDYRIQAITAGQDAQAEVHVVIKNDKGAEFHGIGIDFDVLTASAKAYLQASGKSKTASKQADFEEVK

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

VPM_A_3(4OV9)
?
[Raw transfer]



KIV_A_3(4OV4)
?
[Raw transfer]



KIV_A_3(4OV4)
?
[Raw transfer]



KIV_A_6(1SR9)
LEU1_MYCTU
[Raw transfer]



COI_A_6(3HPS)
LEU1_MYCTU
[Raw transfer]



GOL_A_5(3RMJ)
LEU1_NEIMB
[Raw transfer]



GOL_A_5(3RMJ)
LEU1_NEIMB
[Raw transfer]
22 HHSearch 87.0250% -79 - C2 -3RMJ 2.3 LEU1_NEIMB
2 PsiBlast_PDB 86.9650% -80 - C2 -3RMJ 2.3 LEU1_NEIMB
48 Fugue 84.2635% -68 - C2 -4OV4 3.0 ?
5 PsiBlast_PDB 84.2334% -62 - C2 -4OV9 3.7 ?
4 PsiBlast_PDB 83.3834% -67 - C2 -4OV4 3.0 ?
15 PsiBlast_PDB 78.0524% -56 - C2 -3HPZ - LEU1_MYCTU -
14 PsiBlast_PDB 77.5924% -54 - C2 -3HPS 3.2 LEU1_MYCTU
16 PsiBlast_PDB 77.4624% -55 - C2 -3HQ1 - LEU1_MYCTU -
13 PsiBlast_PDB 76.7224% -54 - C2 -3FIG - LEU1_MYCTU -
24 HHSearch 75.0730% -62 - C2 -3IVS - HOSM_SCHPO -
45 Fugue 74.5122% -36 - C2 -1SR9 - LEU1_MYCTU -
7 PsiBlast_PDB 73.7530% -59 - C2 -3IVU - HOSM_SCHPO -
8 PsiBlast_PDB 72.9330% -57 - C2 -3MI3 - HOSM_SCHPO -
6 PsiBlast_PDB 72.2630% -59 - C2 -3IVT - HOSM_SCHPO -
27 HHSearch 72.2299% -27 - C2 -3EWB - LEU1_LISMF -
1 PsiBlast_PDB 71.8097% -27 - C2 -3EWB - LEU1_LISMF -
12 PsiBlast_PDB 71.7130% -65 - C2 -3A9I - HOSC_THET2 -
25 HHSearch 70.7029% -62 - C2 -3BLE - ? -
11 PsiBlast_PDB 68.8130% -64 - C2 -2ZYF - HOSC_THET2 -
10 PsiBlast_PDB 67.6130% -63 - C2 -2ZTK - HOSC_THET2 -