@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo2134: (2016-04-01 )
MYVSMKGMLERANKEHYAVMAINCFNLETARAVIDAAQELRAPIIIDLLQDHLTSHLGSRFLTKPIIKMAEEASVEVAINLDHGHDVAIVKQCLADGFSSVMMDASSFPYEENVAITKKMVEFAEVYHASVEAEVGNIGAVTGDNYTNQEMYTDPKVAIDFAKRTGIDALAISYGSSHGDYPEGFTPAFQFDIVREIKSATNMPLVLHGGSGCGAENIRESVRLGINKINVGSDFMKAQVNQIKTNLKESPAVNYVDLIHETIKAGTKAVKYYIHLSGSTGKSL

Atome Classification :

(27 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

PGH_A_4(2ISW)
?
[Raw transfer]



PGH_A_5(2ISV)
?
[Raw transfer]



PGH_A_4(2ISW)
?
[Raw transfer]



PGH_A_3(1GVF)
KBAY_ECOLI
[Raw transfer]



PGH_B_12(1GVF)
KBAY_ECOLI
[Raw transfer]



2FP_A_2(3ELF)
ALF_MYCTU
[Raw transfer]



PGH_A_3(1GVF)
KBAY_ECOLI
[Raw transfer]



PGH_B_6(2ISV)
?
[Raw transfer]



13P_A_8(3Q94)
?
[Raw transfer]



PGH_A_9(3C52)
ALF_HELPY
[Raw transfer]



13P_A_5(2FJK)
ALF_THECA
[Raw transfer]



13P_A_2(3EKL)
ALF_MYCTU
[Raw transfer]



FLC_B_6(4TO8)
?
[Raw transfer]



FLC_A_4(4TO8)
?
[Raw transfer]



G3P_A_4(3EKZ)
ALF_MYCTU
[Raw transfer]
49 HHSearch 90.2335% -88 - C1 -1RVG - ? -
23 PsiBlast_CBE 88.7832% -93 - C1 -1RVG - ? -
22 PsiBlast_CBE 88.4832% -92 - C1 -1RVG - ? -
25 PsiBlast_CBE 88.4532% -93 - C1 -1RV8 - ? -
24 PsiBlast_CBE 88.1132% -95 - C1 -1RVG - ? -
26 PsiBlast_CBE 87.9932% -92 - C1 -1RV8 - ? -
4 PsiBlast_PDB 87.9832% -88 - C1 -1RVG - ? -
3 PsiBlast_PDB 87.7732% -88 - C1 -1RV8 - ? -
50 HHSearch 86.8235% -85 - C1 -2ISW 3.9 ?
27 PsiBlast_CBE 86.8132% -94 - C1 -1RV8 - ? -
10 PsiBlast_PDB 86.2332%-105 - C1 -3C4U - ALF_HELPY -
28 PsiBlast_CBE 85.9832%-102 - C1 -1GVF 3.8 KBAY_ECOLI
51 HHSearch 85.7030% -95 * C1 *1GVF 3.5 KBAY_ECOLI
38 PsiBlast_CBE 85.3732%-103 - C1 -3C4U - ALF_HELPY -
40 Fugue 85.2130% -93 - C1 -1GVF - KBAY_ECOLI -
32 PsiBlast_CBE 84.1632%-100 - C1 -3N9R - ? -
21 PsiBlast_CBE 83.6438% -87 - C1 -4TO8 2.7 ?
34 PsiBlast_CBE 83.5932%-102 - C1 -3N9R - ? -
33 PsiBlast_CBE 83.4132% -99 - C1 -3N9R - ? -
5 PsiBlast_PDB 83.4132%-104 - C1 -1GVF 3.5 KBAY_ECOLI
1 PsiBlast_PDB 83.1838% -88 - C1 -4TO8 4.0 ?
8 PsiBlast_PDB 82.7133% -94 - C1 -2ISW 3.9 ?
7 PsiBlast_PDB 82.6633%-104 - C1 -2ISV 3.2 ?
11 PsiBlast_PDB 82.3132% -97 - C1 -3C52 4.1 ALF_HELPY
6 PsiBlast_PDB 81.6532% -82 - C1 -2FJK 3.3 ALF_THECA
29 PsiBlast_CBE 80.2133% -94 - C1 -2ISV 4.2 ?
2 PsiBlast_PDB 77.4537% -86 - C1 -3Q94 4.4 ?