@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo2342: (2016-04-02 )
MRLDKLLSHTGFGSRKEVKPLLKSGAVVVNGTIQKDSKTQVNPDKDQITVHGTPVVYQEFVYFMLHKPQNVVSATEDNVSETVIDLLAQEDTLTDPFPVGRLDKDTEGLLIITNDGTLAHNLLSPKKHIDKTYYAKIDGDVTAEDVEAFAAGIELDDGYTCKPARLEIITPNEIKVTIQEGKFHQVKRMFAARGKSVSYLKRISMGNLQLDESLALGEYRPLTEAELAILQNK

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

U_A_2(1KSV)
RSUA_ECOLI
[Raw transfer]




BU1_A_4(1VIO)
RSUA_HAEIN
[Raw transfer]




URA_A_2(1KSL)
RSUA_ECOLI
[Raw transfer]




URA_A_2(1KSK)
RSUA_ECOLI
[Raw transfer]




URA_A_2(1KSK)
RSUA_ECOLI
[Raw transfer]




URA_A_2(1KSK)
RSUA_ECOLI
[Raw transfer]




BU1_A_5(1VIO)
RSUA_HAEIN
[Raw transfer]




BU1_A_5(1VIO)
RSUA_HAEIN
[Raw transfer]




DTT_B_4(2OLW)
RLUE_ECOLI
[Raw transfer]




24 HHSearch 95.1240% -84 - C5 -1KSK 2.6 RSUA_ECOLI
1 PsiBlast_PDB 93.5839% -79 - C5 -1KSK 2.6 RSUA_ECOLI
2 PsiBlast_PDB 93.2939% -77 - C5 -1KSL 2.5 RSUA_ECOLI
25 HHSearch 93.0538% -82 - C5 -1VIO 2.0 RSUA_HAEIN
3 PsiBlast_PDB 92.5439% -79 - C5 -1KSV 4.0 RSUA_ECOLI
4 PsiBlast_PDB 91.5137% -87 - C5 -1VIO 2.7 RSUA_HAEIN
44 Fugue 91.4238% -72 * C5 *1KSK 2.6 RSUA_ECOLI
26 HHSearch 86.8732% -88 - C5 -3DH3 - RLUF_ECOLI -
5 PsiBlast_PDB 84.9631% -83 - C5 -3DH3 - RLUF_ECOLI -
22 PsiBlast_CBE 84.7831% -82 - C5 -3DH3 - RLUF_ECOLI -
21 PsiBlast_CBE 84.7431% -82 - C5 -3DH3 - RLUF_ECOLI -
20 PsiBlast_CBE 84.3131% -81 - C5 -3DH3 - RLUF_ECOLI -
28 HHSearch 72.4435% -62 - C5 -2OML - RLUE_ECOLI -
29 HHSearch 70.6832% -59 - C5 -2OLW - RLUE_ECOLI -
6 PsiBlast_PDB 68.2629% -75 - C5 -4LAB - RLUB_ECOLI -
8 PsiBlast_PDB 66.0636% -61 - C5 -2OML - RLUE_ECOLI -
7 PsiBlast_PDB 63.7136% -58 - C5 -2OLW - RLUE_ECOLI -
23 PsiBlast_CBE 62.9436% -63 - C5 -2OLW 2.4 RLUE_ECOLI
15 PsiBlast_PDB 61.5325% -81 - C5 -2IST - RLUD_ECOLI -
45 Fugue 59.7421% -50 - C5 -2IST - RLUD_ECOLI -