@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo2500: (2016-04-04 )
MKKLWLKIGLSFFILFFVVMVIVGIFSGELMKSTYLNMKENQLEDDAKILLQTTNMENLDLDKDAATIQKSLDPLGEDIDARITVIDSKGDVVADTKKDPEKLDNHMNRPEVTDILKKGESVGISIRESDSLGYSMLYVAVPVKHQSKTDGVLRISISLESVDAAVAKLWGNLALIFGIALVIIAAISVFIARKITRPVREIIEVSTDLANHKYDSRIHGKISGELQDLSISVNTLAESLETQMFEIKQNEQRLNAIVQNLVSGVMLINVDKQVIMTNRTMYQILGETEITGKPFYEVIKSFALSQLIEATFETKTIQQKEIILYFPREMILDASVSPILGENGEITGIILLLHDITQIRHLENVRSEFVTNVSHELKTPVTALKGFAETLLDGAMYDEMLLKKFLTIIKEESDRLHRLIMDILALSRIEQNPVPENVELVEVDEVIEQSARTIFEMATEKNIQVIIPEKTIPSVTIETDRDKLQQILINLLSNAINYTPVDGKVEVKLIEQEAEVIIEVTDNGIGIPAKDIDRVFERFYRVDKARSRHSGGTGLGLSIVKHLVENCGGRIEVESQEEVGSTFRVTLPKKA

Atome Classification :

(22 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ATP_A_3(4CB0)
CPXA_ECOLI
[Raw transfer]



AN2_B_4(4U7O)
?
[Raw transfer]



ATP_A_4(3SL2)

[Raw transfer]



ATP_A_4(3SL2)

[Raw transfer]



AN2_A_3(4U7O)
?
[Raw transfer]



ADP_A_3(4JAS)
?
[Raw transfer]



ADP_A_7(3DGE)
?
[Raw transfer]



ANP_A_3(4BIW)
CPXA_ECOLI
[Raw transfer]



ADP_A_8(4JAV)
?
[Raw transfer]



ADP_B_13(4JAV)
?
[Raw transfer]



ADP_B_8(3DGE)
?
[Raw transfer]



ADP_A_2(2C2A)
?
[Raw transfer]



ADP_A_2(2C2A)
?
[Raw transfer]



ADP_A_2(4JAU)
?
[Raw transfer]
2 PsiBlast_PDB 83.7943% -82 - C4 -4U7O 9.1 ?
6 PsiBlast_PDB 83.2938% -87 - C4 -4JAV 8.6 ?
65 Fugue 82.2531% -66 * C6 *4I5S - ? -
1 PsiBlast_PDB 81.9243% -83 - C4 -4U7N - ? -
23 PsiBlast_CBE 81.5238% -79 - C4 -3DGE 7.7 ?
22 PsiBlast_CBE 81.0538% -87 - C4 -4JAV 7.4 ?
8 PsiBlast_PDB 80.8338% -93 - C4 -4JAU 6.5 ?
5 PsiBlast_PDB 79.5738% -82 - C4 -3DGE 6.7 ?
21 PsiBlast_CBE 78.6343% -73 - C4 -4U7O 9.2 ?
7 PsiBlast_PDB 77.9538% -78 - C4 -4JAS 8.6 ?
45 HHSearch 77.9241% -83 - C4 -2C2A 7.4 ?
4 PsiBlast_PDB 77.1538% -89 - C4 -2C2A 7.4 ?
3 PsiBlast_PDB 75.5133% -64 - C6 -4I5S - ? -
10 PsiBlast_PDB 68.0730% -71 - C4 -4Q20 - DIVL_CAUCR -
11 PsiBlast_PDB 68.0526% -82 - C4 -3A0R - ? -
43 HHSearch 67.3926% -79 - C4 -3A0R - ? -
18 PsiBlast_PDB 63.8229% -60 - C4 -4BIV - CPXA_ECOLI -
14 PsiBlast_PDB 63.6029% -54 - C4 -4BIW 8.3 CPXA_ECOLI
19 PsiBlast_PDB 63.4229% -49 - C4 -4CB0 7.1 CPXA_ECOLI
12 PsiBlast_PDB 63.1126% -70 - C4 -3D36 - ? -
52 HHSearch 58.3141% -66 - C4 -3SL2 7.7
9 PsiBlast_PDB 53.8246% -52 - C4 -3SL2 7.7