@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo2552: (2016-04-04 )
VTDRLIIQGGKKLSGTLQVDGAKNSAVALIPAAILAESEVVLEGLPDISDVYTLYDILEELGGSVRYDNKTAIIDPTDMLSMPLPSGNVKKLRASYYLMGAMLGRFKKAVIGLPGGCYLGPRPIDQHIKGFEALGAKVTNEQGAIYLRADELKGARIYLDVVSVGATINIMLAAVRAKGKTVIENAAKEPEIIDVATLLTNMGAIIKGAGTDTIRITGVDHLHGCHHTIIPDRIEAGTFMVLAAASGKGIRIENVIPTHLEGIIAKLTEMGVPMDIEEDSIFIGEVENIKKVDIKTYAYPGFPTDLQQPLTALLTRAEGSSVITDTIYPSRFKHIAELERMGGKFKLEGRSAVISGPAKLQGSKVTATDLRAGAALVIAGLLAEGRTEIHGVEHIERGYSKIIEKLSAIGADITRSSTAETNI

Atome Classification :

(22 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

UD1_A_6(2RL2)
MURA_HAEIN
[Raw transfer]



UD1_D_4(1UAE)
MURA_ECOLI
[Raw transfer]



EPU_A_3(2YVW)
MURA_AQUAE
[Raw transfer]



TET_D_4(1A2N)
MURA_ECOLI
[Raw transfer]



EPU_A_3(2YVW)
MURA_AQUAE
[Raw transfer]



FLC_A_2(3ZH4)
?
[Raw transfer]



FCN_G_7(1UAE)
MURA_ECOLI
[Raw transfer]



GG6_A_5(2RL2)
MURA_HAEIN
[Raw transfer]
2 PsiBlast_PDB 94.7358%-111 - C7 -3ZH3 - ? -
3 PsiBlast_PDB 94.3151%-104 - C7 -3SG1 - MURA1_BACAN -
21 PsiBlast_CBE 93.6351%-105 - C7 -3SG1 - MURA1_BACAN -
1 PsiBlast_PDB 92.9958%-114 - C7 -3ZH4 - ? -
46 HHSearch 92.7957%-112 - C7 -3ZH4 4.1 ?
9 PsiBlast_PDB 90.8144% -99 - C7 -1UAE 7.6 MURA_ECOLI
5 PsiBlast_PDB 90.4745% -97 - C7 -2RL1 - MURA_HAEIN -
31 PsiBlast_CBE 90.3942%-105 - C7 -5BQ2 - ? -
13 PsiBlast_PDB 90.3543% -99 - C7 -1A2N 8.0 MURA_ECOLI
29 PsiBlast_CBE 90.1542%-105 - C7 -5BQ2 - ? -
6 PsiBlast_PDB 90.1045% -95 - C7 -2RL2 6.4 MURA_HAEIN
47 HHSearch 89.9247%-103 - C7 -3R38 - MURA1_LISMO -
4 PsiBlast_PDB 89.6746%-102 - C7 -3R38 - MURA1_LISMO -
10 PsiBlast_PDB 89.2742%-104 - C7 -5BQ2 - ? -
30 PsiBlast_CBE 89.2542%-104 - C7 -5BQ2 - ? -
23 PsiBlast_CBE 87.6945%-102 - C7 -3VCY - MURA_VIBFM -
7 PsiBlast_PDB 87.3645%-104 - C7 -3VCY - MURA_VIBFM -
24 PsiBlast_CBE 87.3545%-104 - C7 -3VCY - MURA_VIBFM -
22 PsiBlast_CBE 87.0645%-101 - C7 -3VCY - MURA_VIBFM -
8 PsiBlast_PDB 86.7144%-103 - C7 -1NAW - MURA_ENTCC -
14 PsiBlast_PDB 83.5740%-102 - C7 -2YVW 5.8 MURA_AQUAE
54 HHSearch 82.8140% -98 - C7 -2YVW 5.5 MURA_AQUAE