@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo2608: (2016-04-05 )
MARIAGVDVPREKRIVISLTYIYGIGKQTAKEVLAEAGVSEDTRTRDLTEEELGKIREILDRIKVEGDLRREVNLNIKRLIEIGSYRGMRHRRGLPVRGQNTKNNARTRKGPSKTVAGKKK

Atome Classification :

(23 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

CHAIN_U_21(4JI3)
RS13_THET8
[Raw transfer]
-
CHAIN_U_21(4DUZ)
RS13_THET8
[Raw transfer]
-
CHAIN_U_21(4JI4)
RS13_THET8
[Raw transfer]
-
CHAIN_U_21(4LF5)
RS13_THET8
[Raw transfer]
-
CHAIN_U_21(4DR6)
RS13_THET8
[Raw transfer]
-
CHAIN_U_21(4DR7)
RS13_THET8
[Raw transfer]
-
12 PsiBlast_PDB 96.7264% -90 - C3 -1J5E - RS13_THET8 -
63 PsiBlast_CBE 96.5364% -92 - C3 -2UXD - RS13_THET8 -
5 PsiBlast_PDB 96.3964% -91 - C3 -1HNZ - RS13_THET8 -
18 PsiBlast_PDB 96.3464% -86 - C3 -1XMO - RS13_THET8 -
6 PsiBlast_PDB 95.9364% -88 - C3 -1IBK - RS13_THET8 -
20 PsiBlast_PDB 95.7664% -87 - C3 -1XNQ - RS13_THET8 -
19 PsiBlast_PDB 95.7064% -93 - C3 -1XMQ - RS13_THET8 -
89 HHSearch 95.5365% -93 - C3 -2VQE - RS13_THET8 -
58 PsiBlast_CBE 95.5164% -84 - C3 -3T1Y - RS13_THET8 -
3 PsiBlast_PDB 95.5064% -88 - C3 -1HNW - RS13_THET8 -
4 PsiBlast_PDB 95.4264% -91 - C3 -1HNX - RS13_THET8 -
59 PsiBlast_CBE 95.3664% -94 - C3 -3T1H - RS13_THET8 -
2 PsiBlast_PDB 95.3264% -84 - C3 -1HR0 - RS13_THET8 -
1 PsiBlast_PDB 95.2464% -81 - C3 -1FJG - RS13_THET8 -
110 Fugue 95.1865% -80 - C3 -1FJG - RS13_THET8 -
45 PsiBlast_CBE 86.4164% -95 - C3 -4DUZ Error RS13_THET8
14 PsiBlast_PDB 86.1364% -91 - C3 -1N32 - RS13_THET8 -
71 PsiBlast_CBE 86.0164% -84 - C3 -4JYA - RS13_THET8 -
29 PsiBlast_CBE 85.9764% -91 - C3 -4LF5 3.5 RS13_THET8
35 PsiBlast_CBE 85.7864% -90 - C3 -4JI3 Error RS13_THET8
48 PsiBlast_CBE 85.1464% -84 - C3 -4DR6 3.6 RS13_THET8
34 PsiBlast_CBE 84.8664% -83 - C3 -4JI4 3.4 RS13_THET8
47 PsiBlast_CBE 84.5264% -85 - C3 -4DR7 3.5 RS13_THET8