@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : gbs0256: (2015-11-29 )
MTKYIKADRFFYADHVKENGYLEIKDNHFGKWIENISGQEEILDYSGYQIAPGLVDTHIHGFAGADVMDCDSEGILRMSAGLLSTGVTSFLPTTLTSDTKRLEEASKSVAAVAGKEQGAKIQGIYFEGPYFTEEYKGAQNPIYMRNPNLEEFAQWQKAAKGLITKIALAPEREGVEEFVSAITKQGVTVALGHSNGTYKEAKKAVKAGASVWVHAYNGMRGLTHREPGMVGAVYNLPNTYAELICDGHHVDPVACDILMTQKGHNHVALITDCMAAGGAPDGDYMLGELPVVVSNGTARLKDGGNLAGSILKLKDGLKNVVEWGIATPEEAVRMASYVPAVSVGIDNVCGQIKEGYAADFIVLDKHLDLVATYLDGEKRWQS

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

GLP_B_7(2VHL)
NAGA_BACSU
[Raw transfer]




GLP_A_3(2VHL)
NAGA_BACSU
[Raw transfer]




1 PsiBlast_PDB 97.0333% -80 - C1 -2VHL 4.3 NAGA_BACSU
21 PsiBlast_CBE 96.4233% -77 - C1 -2VHL 4.3 NAGA_BACSU
75 HHSearch 91.3031% -80 - C1 -1O12 - ? -
72 HHSearch 90.1829% -59 - C1 -2VHL - NAGA_BACSU -
23 PsiBlast_CBE 89.7033% -79 - C1 -3IV8 - NAGA_VIBCH -
73 HHSearch 88.9229% -72 * C1 *3IV8 - NAGA_VIBCH -
2 PsiBlast_PDB 88.7634% -84 - C1 -1O12 - ? -
4 PsiBlast_PDB 88.7433% -77 - C1 -3IV8 - NAGA_VIBCH -
22 PsiBlast_CBE 88.6533% -83 - C1 -3IV8 - NAGA_VIBCH -
3 PsiBlast_PDB 88.3433% -80 - C1 -3EGJ - NAGA_VIBCH -
24 PsiBlast_CBE 88.0833% -78 - C1 -3IV8 - NAGA_VIBCH -
25 PsiBlast_CBE 87.9533% -87 - C1 -3EGJ - NAGA_VIBCH -
74 HHSearch 85.5626% -81 - C1 -1YRR - NAGA_ECOLI -
7 PsiBlast_PDB 85.2429% -80 - C1 -2P50 - NAGA_ECOLI -
5 PsiBlast_PDB 84.5329% -89 - C1 -1YMY - NAGA_ECOLI -
8 PsiBlast_PDB 84.4329% -81 - C1 -2P53 - NAGA_ECOLI -
6 PsiBlast_PDB 83.7529% -86 - C1 -1YRR - NAGA_ECOLI -
92 HHSearch 65.5319% -58 - C1 -3HPA - ? -
82 HHSearch 64.7819% -48 - C1 -2QS8 - ? -
77 HHSearch 64.3715% -60 - C1 -2I9U - ? -