@TOME V2.3
(Nov 2016)

Ref. - - Doc.
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Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : gbs0268: (2015-11-29 )
MTFDTIDQLAVNTVRTLSIDAIQAANSGHPGLPMGAAPMAYVLWNKFLNVNPKTSRNWTNRDRFVLSAGHGSALLYSLLHLAGYDLSIDDLKQFRQWGSKTPGHPEVNHTDGVEATTGPLGQGIANAVGMAMAEAHLAAKFNKPGFDLVDHYTYTLHGDGCLMEGVSQEAASLAGHLKLGKLVLLYDSNDISLDGPTSQSFTEDVKGRFESYGWQHILVKDGNDLEAIAAAIEAAKAETDKPTIIEVKTIIGFGAEKQGTSSVHGAPLGAEGITFAKKAYGWEYPDFTVPAEVVARFASDLQARGAKAEEAWNDLFAKYEVEYPELAAEYKEAFAGQAETVELKAHDLGSSVASRVSSQQAIQQLSTQLPNLWGGSADLSASNNTMVAAETDFQASNYAGRNIWFGVREFAMAAAMNGIALHGGTRVYGGTFFVFSNYLLPAVRMAALQNLPTVYVMTHDSIAVGEDGPTHEPIEQLASVRSMPNLNVIRPADGNETNAAWQRAVSETDRPTMLVLTRQNLPVLEGTSELAQEGVNKGAYILSEAKGELDGIIIATGSEVKLALDTQDKLESEGIHVRVVSMPAQNIFDEQEASYQEQVLPSAVTKRLAIEAGSSFGWGKYVGLNGLTLTIDTWGASAPGNRIFEEYGFTVENAVSLYKEL

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

TPP_A_3(4C7X)
?
[Raw transfer]
54 HHSearch 97.0661% -75 - C1 -3M49 - ? -
1 PsiBlast_PDB 94.9161% -73 - C1 -4C7V - ? -
2 PsiBlast_PDB 94.1861% -73 - C1 -4C7X 6.0 ?
4 PsiBlast_PDB 93.9959% -73 - C1 -3M49 - ? -
3 PsiBlast_PDB 93.7759% -74 - C1 -3HYL - ? -
5 PsiBlast_PDB 89.6552% -72 - C1 -1ITZ - TKTC_MAIZE -
21 PsiBlast_CBE 89.6252% -70 - C1 -1ITZ - TKTC_MAIZE -
50 HHSearch 89.5753% -71 - C1 -1ITZ - TKTC_MAIZE -
52 HHSearch 89.4850% -70 - C1 -1GPU - TKT1_YEAST -
22 PsiBlast_CBE 89.3052% -70 - C1 -1ITZ - TKTC_MAIZE -
9 PsiBlast_PDB 89.2751% -69 - C1 -1QGD - TKT1_ECOLI -
24 PsiBlast_CBE 89.1351% -68 - C1 -2R8O - TKT1_ECOLI -
25 PsiBlast_CBE 89.0151% -67 - C1 -2R5N - TKT1_ECOLI -
10 PsiBlast_PDB 88.9650% -72 - C1 -4XEU - ? -
26 PsiBlast_CBE 88.9151% -67 - C1 -1QGD - TKT1_ECOLI -
7 PsiBlast_PDB 88.8251% -68 - C1 -2R8O - TKT1_ECOLI -
6 PsiBlast_PDB 88.7951% -67 - C1 -2R5N - TKT1_ECOLI -
33 PsiBlast_CBE 88.7549% -73 - C1 -1AY0 - TKT1_YEAST -
8 PsiBlast_PDB 88.7451% -67 - C1 -2R8P - TKT1_ECOLI -
23 PsiBlast_CBE 88.7151% -67 - C1 -2R8P - TKT1_ECOLI -