@TOME V2.3
(Nov 2016)

Ref. - - Doc.
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Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : gbs0785: (2015-12-03 )
MNRKKRYRLTVKKQNASIPRRLNLLFFIIVLLFTVLILRLEQMQIGQQSFYMKKLTALTSYTVKESKARGQIFDAKGVVLVENDERPTVAFSRGNNISSQSIKELANKLSHYITLTEVASSDRAKRDYYLADKANYKKVVESLPDSKRYDKFGNHLAESTVYANAVAAVPVSAINYSEDELKVVALFNQMNATPTFGSVKLSTGELSDDQIKKLDADKKELLGISVTSNWHRRKKGTSLSDILGTISTEKAGLPREEVKKYLKKGYSLNDRVGTSYLEKQYEDDLQGIRQIRKVVVNKKGKVVSDNITQEGKSGRNLKLTIDLNYQNKVESILKQYYGSELSSGRASFSEGMYAVAIEPSTGKVLAMAGLKNDHGNLVDDSLGTIAKNFTPGSVVKGATLSSGWENKVLRGNEVLYDQEIANIRSWFTRGLTPISAAQALEYSSNTYMVQVALRLMGQDYNTGDALTDRGYQEAMAKLRKTYGEYGLGVSTGLDLPESEGYVPGKYSLGTTLMESFGQYDAYTPMQLGQYISTIANNGNRLAPHVVSDIYEGNDSNKFAQLVRSITPKTLNKIAISDQELAIIQEGFYNVVNSGSGYATGTSMRGNVTTISGKTGTAETFAKNVNGQTVSTYNLNAIAYDTNRKIAVAVMYPHVTTDTTKSHQLVARDMIDQYISQFTGQ

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

CEF_B_4(3VSL)
?
[Raw transfer]



CEF_A_3(3VSL)
?
[Raw transfer]
51 Fugue 98.8450% -55 - C1 -2WAD - PBP2_STRR6 -
21 PsiBlast_CBE 98.3249% -56 - C1 -2WAD - PBP2_STRR6 -
22 PsiBlast_CBE 97.8049% -56 - C1 -2WAD - PBP2_STRR6 -
2 PsiBlast_PDB 97.6249% -55 - C1 -2WAD - PBP2_STRR6 -
24 HHSearch 97.4050% -55 - C1 -2WAD - PBP2_STRR6 -
3 PsiBlast_PDB 96.1349% -54 - C1 -2WAE - PBP2_STRR6 -
1 PsiBlast_PDB 92.5749% -52 - C1 -2WAF - PBP2_STRR6 -
25 HHSearch 81.6934% -40 * C1 *3VSK - ? -
4 PsiBlast_PDB 81.5034% -38 - C1 -3VSK - ? -
23 PsiBlast_CBE 80.0034% -40 - C1 -3VSL 3.8 ?
5 PsiBlast_PDB 78.7134% -37 - C1 -3VSL 3.7 ?
30 HHSearch 61.4221% -33 - C1 -1QME - PBPX_STRPN -
52 Fugue 60.3220% -45 - C1 -4DKI - ? -
29 HHSearch 59.6022% -30 - C1 -1VQQ - ? -
57 Fugue 59.5221% -32 - C1 -1QME - PBPX_STRPN -
55 Fugue 59.3821% -32 - C1 -1QME - PBPX_STRPN -
28 HHSearch 58.8317% -37 - C1 -3EQU - PBP2_NEIGO -
31 HHSearch 58.6424% -32 - C1 -3UN7 - PBPA_MYCTU -
54 Fugue 56.3121% -33 - C1 -3OC2 - ? -
53 Fugue 55.8120% -38 - C1 -1QME - PBPX_STRPN -