@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : gbs0820: (2015-12-03 )
MGLLVDGKWVDQWYDTASTGGKFVRTVTQFRHWVTKDGSAGPSGDAGFKAESGRYHLYVSLACPWASRVLIMRKLKNLESHISISIVNPLMLENGWTFQEYKGVIPDMINQSQYLYQIYQASQSDYTGRVTVPVLWDKKCHTIVNNESSEIMRMLNTAFNHITGNTDDYYPDSLQGQIDEMNNFIYPKINNGVYKAGFATSQNVYQKEVETLFTALDQLEKHLSDNHYLVGEQFTEADIRLFTTLVRFDTVYYGHFKCNLKALHDYPHLWHYTKRIYNLPGIAETVNFDHIKKHYYGSHKTINPTGIIPAGPNLDWTI

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

0VS_A_13(4G0K)
YQJG_ECOLI
[Raw transfer]




0VS_B_23(4G0K)
YQJG_ECOLI
[Raw transfer]




GSH_A_3(3R3E)
YQJG_ECOLI
[Raw transfer]




GSH_A_3(3PPU)
?
[Raw transfer]




GSH_A_3(3PPU)
?
[Raw transfer]




GSH_B_13(4G0L)
YQJG_ECOLI
[Raw transfer]




GSH_B_10(3R3E)
YQJG_ECOLI
[Raw transfer]




GSH_A_3(4G0L)
YQJG_ECOLI
[Raw transfer]




MES_A_12(4G0L)
YQJG_ECOLI
[Raw transfer]




1 PsiBlast_PDB 95.9261%-119 - C1 -3R3E 5.5 YQJG_ECOLI
21 PsiBlast_CBE 94.4961%-116 - C1 -4G0L 4.1 YQJG_ECOLI
2 PsiBlast_PDB 93.9861%-115 - C1 -4G0I - YQJG_ECOLI -
24 PsiBlast_CBE 93.8561%-117 - C1 -3R3E 4.1 YQJG_ECOLI
22 PsiBlast_CBE 93.7361%-111 - C1 -4G0K 5.5 YQJG_ECOLI
4 PsiBlast_PDB 93.4161%-113 - C1 -4G0L 5.5 YQJG_ECOLI
3 PsiBlast_PDB 92.0461%-110 - C1 -4G0K 5.3 YQJG_ECOLI
23 PsiBlast_CBE 91.7161%-110 - C1 -4G0I - YQJG_ECOLI -
44 HHSearch 89.5450%-109 - C1 -3PPU 5.8 ?
6 PsiBlast_PDB 88.3150%-115 - C1 -3PPU 5.8 ?
45 HHSearch 85.0738%-117 - C1 -3M1G - ? -
5 PsiBlast_PDB 83.5153%-106 - C1 -4FQU - ? -
8 PsiBlast_PDB 83.1037%-116 - C1 -3M1G - ? -
7 PsiBlast_PDB 77.0040%-108 - C1 -4PTS - ? -
50 HHSearch 53.6819%-104 - C1 -3IBH - GST2_YEAST -
62 HHSearch 50.5423% -94 - C1 -1R5A - ? -
54 HHSearch 48.5617% -87 - C1 -3AY8 - ? -
66 HHSearch 48.3917%-100 - C1 -3GTU - GSTM3_HUMAN -
57 HHSearch 48.3815% -95 - C1 -3VLN - GSTO1_HUMAN -
60 HHSearch 48.1416% -93 - C1 -1OYJ - GSTU1_ORYSI (first) -