@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : gbs0821: (2015-12-03 )
MRLDKLLGQAGFGSRNQVKKLIRSRQVSVDGQIVTKDNVIVDSGLQSIFVGKERVCLKESSYYLLYKPSGVVSAVRDSEHKTVIDLISEKDRVEGLYPIGRLDRDTEGLLIITNNGPLGYRMLHPKHHVAKTYYVEVNGFLERDAITFFEEGVVFDDGTKCKPAELTIDTANNDKSTARITITEGKFHQVKKMFLAYGVKVIYLRRISFGDLRLDMNLKPGQYRRLRDSEAAILKRYLD

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

U_A_2(1KSV)
RSUA_ECOLI
[Raw transfer]




BU1_A_4(1VIO)
RSUA_HAEIN
[Raw transfer]




URA_A_2(1KSL)
RSUA_ECOLI
[Raw transfer]




URA_A_2(1KSK)
RSUA_ECOLI
[Raw transfer]




URA_A_2(1KSK)
RSUA_ECOLI
[Raw transfer]




URA_A_2(1KSK)
RSUA_ECOLI
[Raw transfer]




BU1_A_5(1VIO)
RSUA_HAEIN
[Raw transfer]




22 HHSearch 93.8536%-111 - C7 -1KSK 2.6 RSUA_ECOLI
23 HHSearch 92.2335%-109 - C7 -1VIO 2.0 RSUA_HAEIN
42 Fugue 90.9534%-100 - C7 -1KSK 2.6 RSUA_ECOLI
2 PsiBlast_PDB 90.8134%-101 - C7 -1KSK 2.6 RSUA_ECOLI
1 PsiBlast_PDB 89.9634% -97 * C7 *1VIO 2.7 RSUA_HAEIN
3 PsiBlast_PDB 89.8234% -98 - C7 -1KSL 2.5 RSUA_ECOLI
4 PsiBlast_PDB 88.5034% -97 - C7 -1KSV 4.0 RSUA_ECOLI
24 HHSearch 81.9426% -95 - C7 -3DH3 - RLUF_ECOLI -
25 HHSearch 78.1736% -96 - C7 -2OML - RLUE_ECOLI -
26 HHSearch 76.4634% -91 - C7 -2OLW - RLUE_ECOLI -
7 PsiBlast_PDB 76.0936%-100 - C7 -2OML - RLUE_ECOLI -
8 PsiBlast_PDB 75.4826% -91 - C7 -3DH3 - RLUF_ECOLI -
21 PsiBlast_CBE 74.6436% -93 - C7 -2OLW - RLUE_ECOLI -
6 PsiBlast_PDB 74.6336% -94 - C7 -2OLW - RLUE_ECOLI -
5 PsiBlast_PDB 73.3931% -90 - C7 -4LAB - RLUB_ECOLI -
43 Fugue 62.2417% -65 - C7 -2IST - RLUD_ECOLI -
27 HHSearch 57.0527% -47 - C7 -2GML - RLUF_ECOLI -
9 PsiBlast_PDB 54.2428% -44 - C7 -2GML - RLUF_ECOLI -
29 HHSearch 52.0618% -77 - C7 -1V9K - RLUC_ECOLI -
30 HHSearch 50.0517% -78 - C7 -2I82 - RLUA_ECOLI -