@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : gbs0845: (2015-12-03 )
MNKSKKIENYQLLLLQAQALFSDETNALANLSNASAMLNAMLPNSVFTGFYLFDGKELILGPFQGGVSCVHITLGKGVCGESAQTAKTLIVDDVTKHANYISCDSKAMSEIVVPMFKNGKLLGVLDLDSSLVADYDEIDQEYLEKFVGILVEHTIWNLDMFGVEK

Atome Classification :

(21 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

IPA_A_2(3KSI)
?
[Raw transfer]




SME_B_4(3RFB)
?
[Raw transfer]




SME_A_3(3RFB)
?
[Raw transfer]




SME_A_3(3RFB)
?
[Raw transfer]




SME_A_3(3MMH)
?
[Raw transfer]




MES_D_4(1VHM)
MSRC_ECOLI
[Raw transfer]




SME_B_4(3KSG)
?
[Raw transfer]




SME_A_3(3KSG)
?
[Raw transfer]




SME_A_3(3KO6)
FRMSR_YEAST
[Raw transfer]




SME_B_4(3KO6)
FRMSR_YEAST
[Raw transfer]




1 PsiBlast_PDB 95.7764%-124 - C2 -3RFB 3.4 ?
21 PsiBlast_CBE 94.6264%-119 - C2 -3RFB 4.0 ?
51 HHSearch 91.4661%-121 - C2 -3RFB 3.4 ?
2 PsiBlast_PDB 84.5148%-113 - C2 -3KSF - ? -
39 Fugue 83.8141%-114 - C2 -1F5M - FRMSR_YEAST -
23 PsiBlast_CBE 83.5248%-111 - C2 -3KSF - ? -
50 HHSearch 83.0041%-104 * C2 *3MMH 3.5 ?
25 PsiBlast_CBE 82.9341%-105 - C2 -3MMH - ? -
40 Fugue 82.5340%-114 - C2 -1F5M - FRMSR_YEAST -
22 PsiBlast_CBE 81.8248%-114 - C2 -3KSF - ? -
6 PsiBlast_PDB 81.8041%-104 - C2 -3MMH - ? -
4 PsiBlast_PDB 81.3148%-113 - C2 -3KSI 4.1 ?
56 HHSearch 80.9346%-114 - C2 -3KSH - ? -
24 PsiBlast_CBE 80.9147%-112 - C2 -3KSG 3.7 ?
3 PsiBlast_PDB 80.5348%-115 - C2 -3KSH - ? -
5 PsiBlast_PDB 80.0447%-110 - C2 -3KSG 3.9 ?
27 PsiBlast_CBE 76.6641%-105 - C2 -1F5M - FRMSR_YEAST -
26 PsiBlast_CBE 76.5141%-111 - C2 -3KO6 2.9 FRMSR_YEAST
49 HHSearch 76.3035%-107 - C2 -1VHM 3.3 MSRC_ECOLI
7 PsiBlast_PDB 76.0441%-105 - C2 -1F5M - FRMSR_YEAST -
8 PsiBlast_PDB 75.7441%-109 - C2 -3KO6 3.1 FRMSR_YEAST