@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : gbs1048: (2015-12-05 )
MATIQWFPGHMSKARRQVQENIKHVDFVTILVDARLPLSSQNPMLTKIVGDKPKLMILNKADLADPIRTKEWRDFYESQGLKTLAINSKEQSTVKKVTDIAKILMSDKIAKLRGRGIQKETLRTMIIGIPNAGKSTLMNRLAGKKIAVVGNKPGVTKGQQWLKSNKELEILDTPGILWPKFEDELVGLKLALTGAIKDQLLPMDEVTIFGLNYFKTYYPDRLKERFKSINLEDEAPEIIMALTQKLGYRDDYDRFYNLFVKEVRDGKLGRYTLDIVGEHDGNN

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

GTP_A_2(3CNN)
RBGA_THEMA
[Raw transfer]




GNP_A_2(3CNL)
RBGA_THEMA
[Raw transfer]




GNP_A_2(3CNL)
RBGA_THEMA
[Raw transfer]




GNP_A_3(1PUJ)
RBGA_BACSU
[Raw transfer]




GNP_A_3(1PUJ)
RBGA_BACSU
[Raw transfer]




GNP_A_3(1PUJ)
RBGA_BACSU
[Raw transfer]




GDP_A_2(3CNO)
RBGA_THEMA
[Raw transfer]




105 HHSearch 96.6047% -93 - C14 -1PUJ 7.5 RBGA_BACSU
128 Fugue 96.3046% -94 - C14 -1PUJ 7.5 RBGA_BACSU
1 PsiBlast_PDB 94.4647% -90 - C14 -1PUJ 7.5 RBGA_BACSU
4 PsiBlast_PDB 77.7432% -87 - C14 -3CNO 7.0 RBGA_THEMA
3 PsiBlast_PDB 77.1932% -88 - C14 -3CNN 7.1 RBGA_THEMA
2 PsiBlast_PDB 77.0732% -83 - C14 -3CNL 6.7 RBGA_THEMA
106 HHSearch 73.9431% -58 * C14 *3CNL 7.0 RBGA_THEMA
109 HHSearch 58.6321% -73 - C14 -2YV5 - RSGA_AQUAE -
112 HHSearch 57.2526% -69 - C14 -2RCN - RSGA_SALTY -
108 HHSearch 54.8626% -56 - C14 -3H2Y - ? -
110 HHSearch 54.2322% -69 - C14 -1U0L - RSGA_THEMA -
107 HHSearch 50.0623% -45 - C14 -3EC1 - ? -
129 Fugue 48.3018% -9 - C9 -3EC1 - ? -
111 HHSearch 47.0820% -63 - C14 -1T9H - RSGA_BACSU -
130 Fugue 46.5213% -49 - C6 -1MKY - DER_THEMA -
118 HHSearch 46.0238% -40 * C12 *3IEV - ERA_AQUAE -
127 HHSearch 44.3612% -75 - C14 -3IEV - ERA_AQUAE -
79 PsiBlast_CBE 44.3335% -25 - C12 -3A1V - ? -
132 Fugue 41.8915% -27 - C5 -1B74 - MURI_AQUPY -
84 PsiBlast_CBE 41.6235% -12 - C12 -3A1S - ? -