@TOME V2.3
(Nov 2016)

Ref. - - Doc.
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : gbs1259: (2015-12-06 )
MSDIKIMALGGVRENGKNLYVVEVNDSIFVLDAGLKYPENEQLGVDVVIPNLDYLIENKKRVQGIFLTHGHADAIGALPYIIAEVKAPVFGSPLTIELAKLFVKNSTAVKKFNNFHVIDSETEIEFQDAVISFFKTTHSIPESMGIVIGTKEGNIVYTGDFKFDQAARKYYQTDLARLAEIGRDGVLALLSDSANATSNDQVASEYEVGDEIKSVIEDAEGRVIVAAVASNLIRIQQVFDAAAENGRRVVLTGFDIENIVRTAIRMKRIHIADENMIIKPKDMTRYEDNELLILETGRMGEPINGLQKMAIGRHRYVQIKDGDLVFIVTTPSIAKEAVVARVENLIYKAGGSVKLITQNLRVSGHANGRELQLLMNLLKPKYLFPIQGEYRDLSAHAGLAQEVGMSADDIYIVKRGDIMVLEKDGFFHSGFVPAGDVMIDGNAIGDVGNIVLRDRKVLSEDGIFIVVITVSKKEKKIISKARVNTRGFVYVKKSRDILRESAELVNTTVEDYLSKDTFDWGELKGKVRDEVSKFLFDQTKRRPAILPVVMEVR

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

C5P_B_9(5A0V)
?
[Raw transfer]



NACID_E_3(5A0V)
?
[Raw transfer]
-
NACID_F_4(5A0T)
?
[Raw transfer]
-
NACID_E_3(5A0T)
?
[Raw transfer]
-
1 PsiBlast_PDB 99.2539%-104 - C1 -3ZQ4 - RNJ1_BACSU -
21 PsiBlast_CBE 97.9639%-106 - C1 -3ZQ4 - RNJ1_BACSU -
22 PsiBlast_CBE 97.8639%-106 - C1 -3ZQ4 - RNJ1_BACSU -
23 PsiBlast_CBE 96.9339%-105 - C1 -3ZQ4 - RNJ1_BACSU -
78 HHSearch 89.8234% -98 * C1 *3BK2 - RNJ_THET2 -
5 PsiBlast_PDB 87.1034% -93 - C1 -3BK2 - RNJ_THET2 -
4 PsiBlast_PDB 86.9834% -91 - C1 -3BK1 - RNJ_THET2 -
2 PsiBlast_PDB 86.8234% -97 - C1 -3T3N - RNJ_THET2 -
3 PsiBlast_PDB 86.7734% -96 - C1 -3T3O - RNJ_THET2 -
25 PsiBlast_CBE 81.9932%-100 - C1 -5A0T 8.3 ?
7 PsiBlast_PDB 81.8432% -99 - C1 -5A0V 8.2 ?
6 PsiBlast_PDB 81.5032%-101 - C1 -5A0T 7.3 ?
24 PsiBlast_CBE 81.3132% -99 - C1 -5A0V 3.0 ?
82 HHSearch 60.5517% -76 - C1 -2I7T - CPSF3_HUMAN -
81 HHSearch 60.4421% -73 - C1 -3AF5 - ? -
79 HHSearch 56.2416% -75 - C1 -2AZ4 - ? -
80 HHSearch 55.9317% -77 - C1 -3IEK - RNSE_THET8 -
100 Fugue 55.3515% -75 - C1 -2AZ4 - ? -
84 HHSearch 54.5518% -63 - C1 -2YCB - ? -
103 Fugue 51.6918% -82 - C1 -5AHR - -