@TOME V2.3
(Nov 2016)

Ref. - - Doc.
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : gbs1403: (2015-12-07 )
MKKKIILKSSVLGLVAGTSIMFSSAFADQVGVQVIGVNDFHGALDNTGTANMPDGKVTNAGTAAQLDAYIDDAQKDFKQTNPNGESIRVQAGDMVGASPANSGLLQDEPTVKTFNAMNVEYGTLGNHEFDEGLAEYNRIVTGKAPAPDSNINNITKSYPHEAAKQEIVVANVIDKVNKQIPYNWKPYAIKNIPVNNKSVNVGFIGIVTKDIPNLVLRKNYEQYEFLDEAETIVKYAKELQAKNVKAIVVLAHVPATSKDDIAEGEAAEMMKKVNQLFPENSVDIVFAGHNHQYTNGLVGKTRIVQALSQGKAYADVRGVLDTDTQDFIETPSAKVVAVAPGKKTGSADIQAIVDQANTIVKQVTEAKIGTAEVSGMITRSVDQDNVSPVGSLITEAQLAIARKSWPDIDFAMTNNGGIRADLLIKPDGTITWGAAQAVQPFGNILQVVEITGRDLYKALNEQYDQKQNFFLQIAGLRYTYTDNKEGGEETPFKVVKAYKSNGEEINPDAKYKLVINDFLFGGGDGFASFRNAKLLGAINPDTEVFMAYITDLEKAGKKVSVPNNKPKIYVTMKMVNETITQNDGTHSIIKKLYLDRQGNIVAQEIVSDTLNQTKSKSTKINPVTTIHKKQLHQFTAINPMRNYGKPSNSTTVKSKQLPKTNSEYGQSFLMSVFGVGLIGIALNTKKKHMK

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

EPE_A_4(3JYF)
?
[Raw transfer]



CIT_A_5(3GVE)
NTPES_BACSU
[Raw transfer]



CTN_A_4(3IVE)
?
[Raw transfer]
26 HHSearch 96.9025% -59 - C1 -2Z1A - ? -
28 HHSearch 91.4923% -64 - C1 -1HP1 - USHA_ECOLI -
10 PsiBlast_PDB 91.2323% -58 - C1 -1USH - USHA_ECOLI -
27 HHSearch 91.0924% -45 - C1 -3IVE 6.2 ?
9 PsiBlast_PDB 90.2323% -58 - C1 -2USH - USHA_ECOLI -
46 Fugue 87.8720% -37 - C1 -3ZTV - 5NTD_HAEIN -
2 PsiBlast_PDB 86.6623% -39 - C1 -4H1S - 5NTD_HUMAN -
4 PsiBlast_PDB 84.7722% -38 - C1 -4H2B - 5NTD_HUMAN -
11 PsiBlast_PDB 84.6223% -60 - C1 -1OI8 - USHA_ECOLI -
14 PsiBlast_PDB 84.4223% -60 - C1 -4WWL - USHA_ECOLI -
15 PsiBlast_PDB 84.2623% -60 - C1 -1OID - USHA_ECOLI -
17 PsiBlast_PDB 84.2023% -58 - C1 -1HP1 - USHA_ECOLI -
13 PsiBlast_PDB 83.8723% -57 - C1 -1HPU - USHA_ECOLI -
16 PsiBlast_PDB 83.7223% -63 - C1 -1OIE - USHA_ECOLI -
6 PsiBlast_PDB 82.3423% -39 - C1 -4H2F - 5NTD_HUMAN -
8 PsiBlast_PDB 82.1724% -34 - C1 -3IVD - ? -
3 PsiBlast_PDB 81.7523% -36 - C1 -4H2I - 5NTD_HUMAN -
7 PsiBlast_PDB 81.7223% -40 - C1 -4H2G - 5NTD_HUMAN -
1 PsiBlast_PDB 81.6826% -61 - C1 -2Z1A - ? -
51 Fugue 81.0718% -43 - C1 -2WDC - ? -