@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : gbs1451: (2015-12-08 )
MKKIKDFASRAINTRLGFILLLVVIYWLKTIWAYHTDFYLGLENSYQLFLTIINPIPLGLLIIGLALYVKRTKAFYITAFITYAIVNILLIANAIYYREFSDFITVSAVLASSKTSAGLGDSALNLLRIWDLVYVFDFIILIFLFATKKIHLDDRPFNKRASFSITALSGLLFSINLFLAEIDRPELLSRGFSNTYIVKALGLPSFSIYSGNQTYQAQKERNGATAQELATAKKYVAEHYAKPNPEYYGIGKGRNVIMIHLESFQQFLIDYKLNVDGKEHVVTPFINSLYHSKETISFSNFFHQVKAGKTSDAETLMENSLFGLSSGSFMVNYGGENTQFAAPHILAQNGGYSSAVFHGNVGTFWNRNNAYKQWGYDYFFDSSYFSKQTKDNSFQYGLNDKYMFADSIKYLEHMQQPFYTKFITVSNHYPYTSLKGESDEEGFPLAKTNDETINGYFATANYLDTALKSFFEYLKAAGVYDNSIIVMYGDHYGISNTRNPSLAELLGKDPETWSEYDNAMLQRVPYMIHIPGYSKGFISNTYGGEVDNLPTLLHILGIDTSKYTQLGQDLLSKDNKQMVAMRTTGQYITPKYTNYSGHLYYTDSGQEITNPDETTKAEIKAIRDATNKQLSTSDSIQTGDLLRFDENNGLKTVEVEKFNYTHSLKALKAKERKLKDRSTSIYSKHNNKSTVDLFHAPSYLELQDPNKTHKTSKK

Atome Classification :

(22 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

GP9_A_4(2W5R)
LTAS_STAAW
[Raw transfer]




GP9_A_4(2W5T)
LTAS_STAAW
[Raw transfer]




GP9_A_4(2W5S)
LTAS_STAAW
[Raw transfer]




EDO_A_3(2W5Q)
LTAS_STAAW
[Raw transfer]




EDO_A_3(2W5Q)
LTAS_STAAW
[Raw transfer]




EDO_A_3(2W5Q)
LTAS_STAAW
[Raw transfer]




24 PsiBlast_CBE 99.5151% -66 - C4 -4UOR - ? -
26 PsiBlast_CBE 99.4451% -66 * C4 *4UOR - ? -
21 PsiBlast_CBE 99.4451% -64 - C4 -4UOR - ? -
25 PsiBlast_CBE 99.3651% -65 - C4 -4UOR - ? -
23 PsiBlast_CBE 99.3251% -65 - C4 -4UOR - ? -
27 PsiBlast_CBE 99.2651% -66 - C4 -4UOR - ? -
1 PsiBlast_PDB 99.2051% -66 - C4 -4UOO - ? -
29 PsiBlast_CBE 99.1851% -63 - C4 -4UOO - ? -
22 PsiBlast_CBE 99.1151% -63 - C4 -4UOR - ? -
31 PsiBlast_CBE 98.9851% -66 - C4 -4UOO - ? -
2 PsiBlast_PDB 98.8951% -65 - C4 -4UOR - ? -
30 PsiBlast_CBE 98.3251% -64 - C4 -4UOO - ? -
18 PsiBlast_CBE 98.3251% -62 - C4 -4UOR - ? -
28 PsiBlast_CBE 98.2851% -65 - C4 -4UOO - ? -
32 HHSearch 96.2648% -65 - C4 -2W8D - LTAS2_BACSU -
3 PsiBlast_PDB 95.9246% -64 - C4 -2W8D - LTAS2_BACSU -
33 HHSearch 94.2744% -64 - C4 -2W5Q 2.7 LTAS_STAAW
56 Fugue 94.1143% -60 - C4 -2W5Q 2.7 LTAS_STAAW
7 PsiBlast_PDB 93.4343% -60 - C4 -2W5R 3.5 LTAS_STAAW
4 PsiBlast_PDB 93.0643% -60 - C4 -2W5Q 2.7 LTAS_STAAW
5 PsiBlast_PDB 92.9843% -61 - C4 -2W5S 3.8 LTAS_STAAW
6 PsiBlast_PDB 92.8643% -60 - C4 -2W5T 3.4 LTAS_STAAW