@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : gbs1541: (2015-12-08 )
MRLDKFLVECGLGSRTQVKLILKKKQISVNGNSETSPKVQVDEYRDEIKYNGTLVSYEKFVYYMLHKPKGVISATDDPSHKTVLDLLDKTARDKAVFPVGRLDIDTTGLLLITNNGELAHKMLSPKKHVDKCYEAKISGIMTEDDILAFDKGIILKDFTCLPALLEIVEVNQVKKQSLVKITIKEGKFHQVKRMVAACGKEVLELKRLRMGNLQLDKQLESGQWRRLTIKEIEKLEKYMQ

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

U_A_2(1KSV)
RSUA_ECOLI
[Raw transfer]




BU1_A_4(1VIO)
RSUA_HAEIN
[Raw transfer]




URA_A_2(1KSL)
RSUA_ECOLI
[Raw transfer]




URA_A_2(1KSK)
RSUA_ECOLI
[Raw transfer]




URA_A_2(1KSK)
RSUA_ECOLI
[Raw transfer]




URA_A_2(1KSK)
RSUA_ECOLI
[Raw transfer]




BU1_A_5(1VIO)
RSUA_HAEIN
[Raw transfer]




25 HHSearch 95.5038% -89 - C3 -1VIO 2.0 RSUA_HAEIN
1 PsiBlast_PDB 95.3537% -92 - C3 -1VIO 2.7 RSUA_HAEIN
26 HHSearch 94.4137% -84 - C3 -1KSK 2.6 RSUA_ECOLI
2 PsiBlast_PDB 94.4037% -83 - C3 -1KSK 2.6 RSUA_ECOLI
4 PsiBlast_PDB 93.6737% -87 - C3 -1KSV 4.0 RSUA_ECOLI
27 HHSearch 93.5132% -84 - C3 -3DH3 - RLUF_ECOLI -
3 PsiBlast_PDB 92.1237% -84 - C3 -1KSL 2.5 RSUA_ECOLI
8 PsiBlast_PDB 90.9231% -76 - C3 -3DH3 - RLUF_ECOLI -
23 PsiBlast_CBE 90.6131% -75 - C3 -3DH3 - RLUF_ECOLI -
22 PsiBlast_CBE 89.8131% -75 - C3 -3DH3 - RLUF_ECOLI -
24 PsiBlast_CBE 89.7331% -75 - C3 -3DH3 - RLUF_ECOLI -
45 Fugue 85.3034% -68 - C3 -1KSK 2.6 RSUA_ECOLI
5 PsiBlast_PDB 81.8929% -85 - C3 -4LAB - RLUB_ECOLI -
7 PsiBlast_PDB 80.6935% -88 - C3 -2OML - RLUE_ECOLI -
6 PsiBlast_PDB 78.6235% -87 - C3 -2OLW - RLUE_ECOLI -
21 PsiBlast_CBE 78.0535% -87 - C3 -2OLW - RLUE_ECOLI -
28 HHSearch 76.8334% -79 - C3 -2OML - RLUE_ECOLI -
30 HHSearch 71.8131% -71 - C3 -2OLW - RLUE_ECOLI -
29 HHSearch 65.7932% -39 - C3 -2GML - RLUF_ECOLI -
9 PsiBlast_PDB 63.9231% -29 - C3 -2GML - RLUF_ECOLI -