@TOME V2.3
(Nov 2016)

Ref. - - Doc.
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : gbs1720: (2015-12-10 )
MKIFDKSMKLEHVAYDIRGPVLEEADRMRANGEKILRLNTGNPAAFGFEAPDEVIRDLITNARESEGYSDSKGIFSARKAVMQYYQLQNIHVDMDDIYIVNGVSEGISMSMQALLDNDDEVLVPMPDYPLWTACVSLAGGNAVHYICDEEANWYPDIDDIKSKITSKTKAIVLINPNNPTGAVYPREILQEIVDIARQNDLIIFSDEVYDRLVMDGMEHIPIASIAEDIFTVTLSGLSKSHRICGFRVGWMVLSGPRQHVKGYIEGLNMLANMRLCSNVLAQQVIQTSLGGQQSIDSMLLPGGRIYEQRNYIHKAINEIPGLSAVKPNAGLYLFPKIDTDMYRIDNDEEFVLNFLKQEKVLLTHGRGFNMNTADHFRIVYLPRVDELTELQEKMARFLSQYKR

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

DCS_A_3(3TCM)
ALA2_HORVU
[Raw transfer]



PLP_B_5(4CVQ)
ALAA_ECOLI
[Raw transfer]



PLP_A_3(1IJI)
HIS8_ECOLI
[Raw transfer]
1 PsiBlast_PDB 99.4959%-111 - C1 -4CVQ - ALAA_ECOLI -
21 PsiBlast_CBE 98.7759%-109 - C1 -4CVQ 4.8 ALAA_ECOLI
33 HHSearch 74.4839% -97 - C1 -1XI9 - ? -
22 PsiBlast_CBE 72.9238% -97 - C1 -1XI9 - ? -
48 HHSearch 67.3127% -89 - C1 -3TCM - ALA2_HORVU -
24 Fugue 64.8227% -85 - C1 -3TCM - ALA2_HORVU -
5 PsiBlast_PDB 64.2627% -93 - C1 -1J32 - ? -
14 PsiBlast_PDB 63.9525% -88 - C1 -3TCM 7.0 ALA2_HORVU
35 HHSearch 61.2226% -81 - C1 -1J32 - ? -
9 PsiBlast_PDB 61.2126% -91 - C1 -1B5O - AAT_THET8 -
17 PsiBlast_PDB 60.5826% -93 - C1 -1BJW - AAT_THET8 -
12 PsiBlast_PDB 60.4926% -93 - C1 -1GC3 - AAT_THET8 -
42 HHSearch 60.4428% -91 - C1 -1O4S - AAT_THEMA -
15 PsiBlast_PDB 60.2526% -95 - C1 -1BKG - AAT_THET8 -
37 HHSearch 59.9728% -82 - C1 -1GD9 - ? -
11 PsiBlast_PDB 59.8126% -92 - C1 -1B5P - AAT_THET8 -
13 PsiBlast_PDB 59.6126% -96 - C1 -1GC4 - AAT_THET8 -
10 PsiBlast_PDB 59.5226% -92 - C1 -1GCK - AAT_THET8 -
6 PsiBlast_PDB 59.0127% -90 - C1 -1O4S - AAT_THEMA -
39 HHSearch 58.8020% -87 - C1 -3JTX - ? -