@TOME V2.3
(Nov 2016)

Ref. - - Doc.
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Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : gbs2041: (2015-12-12 )
MMVLERERFMTESDIKVIKRDGRLVSFDKYKIYTALLKASNKVIKMSPLVEAKLEMIADHVIAEIYNRFKDNIKIYEIQNIVEHKLLEANEYAIAQEYINYRTQRDFERSQATDINFSIGKLINKDQTVVNENANKDSDVFNTQRDLTAGIVGKSIGLKMLPSHVANAHQKGDIHYHDLDYSPYTPMTNCCLIDFKGMLANGFKIGNAEVESPKSIQTATAQISQIIANVASSQYGGCTADRIDEFLAPYAQLNYQKHLKDAKEWVIEDKQEDYARAKTQKDIYDAMQSLEYEINTLFTSNGQTPFTSLGFGLGTNWFEREIQKAILKIRIQGLGSEHRTAIFPKLIFTLKKGLNLEEDSPNYDIKQLALECATKRMYPDVLSYDKIIDLTGSFKAPMGCRSFLQGWRDANGQDVTSGRMNLGVVTVNLPRVAMESNGDMDKFWEIFNERMSIARDALVYRVERVKEAIPANAPILYQYGAFGERLGKYDNVDRLFNHRRATVSLGYIGLYEVASVFYGGDWEDNHQAKAFTVDIVRKMKQLCADWSDEYDYHFSVYSTPSESLTDRFCRLDTEKFGIVTDITDKEYYTNSFHYDVRKNPTPFEKLDFEKIYPETGASGGFIHYCEYPVLQQNPKALEAVWDYAYDRVGYLGTNTPIDKCYQCQFEGDFTPTDRGFTCPNCGNSDPKTVDVVKRTCGYLGNPQARPMVNGRHKEISARVKHMNGSSIKNQGN

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

TTP_A_5(1H79)
NRDD_BPT4
[Raw transfer]



DCP_A_2(1H78)
NRDD_BPT4
[Raw transfer]



DGT_A_3(1HK8)
NRDD_BPT4
[Raw transfer]
4 PsiBlast_PDB 92.4852% -77 - C3 -1H78 4.2 NRDD_BPT4
72 Fugue 92.4053% -74 - C3 -1H7A - NRDD_BPT4 -
5 PsiBlast_PDB 92.0952% -76 - C3 -1HK8 5.1 NRDD_BPT4
45 HHSearch 91.9653% -77 - C3 -1H7B - NRDD_BPT4 -
3 PsiBlast_PDB 91.9652% -75 - C3 -1H7B - NRDD_BPT4 -
1 PsiBlast_PDB 91.8052% -75 - C3 -1H79 4.1 NRDD_BPT4
2 PsiBlast_PDB 91.3652% -72 - C3 -1H7A - NRDD_BPT4 -
6 PsiBlast_PDB 65.0421% -65 - C3 -4COI - ? -
9 PsiBlast_PDB 64.8221% -70 - C3 -4COL - ? -
8 PsiBlast_PDB 64.1821% -69 - C3 -4COJ - ? -
7 PsiBlast_PDB 61.8221% -70 - C3 -4CON - ? -
46 HHSearch 47.4014% -46 - C3 -1R9D - ? -
48 HHSearch 45.7813% -34 * C3 *2F3O - ? -
10 PsiBlast_PDB 43.6021% 5 - C3 -4U3E - ? -
47 HHSearch 43.2212% -41 - C3 -1H16 - PFLB_ECOLI -
58 HHSearch 41.5622%-134 - C3 -2XAP - RIR1_ECOLI -
78 Fugue 40.3318% -20 - C1 -4LLG - RPOD_ECOLI -
60 HHSearch 37.7213% -49 - C3 -1PEQ - RIR3_SALTY -
51 HHSearch 37.4417% -63 - C3 -3K8T - RIR1_YEAST -
56 HHSearch 37.1811% -65 - C3 -2WGH - RIR1_HUMAN -