@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : gbs2061: (2015-12-13 )
MKLQKPKGTQDILPGESAKWQYVENVIRNLFKQYHYDEIRTPMFEHYEVISRSVGDTTDIVTKEMYDFHDKGDRHITLRPEGTAPVVRSYVENKLFAPEVQKPTKMYYIGSMFRYERPQAGRLREFHQVGVECFGSNNPATDVETIAMGHHLFEDLGIKNVKLHLNSLGNPESRQAYRQALIDYLTPIREQLSKDSQRRLNENPLRVLDSKEPEDKLAVENAPSILDYLDESSQAHFDAVCHMLDALNIPYIIDTNMVRGLDYYNHTIFEFITEIEDNELTICAGGRYDGLVSYFGGPETPAFGFGLGLERLLLILDKQGISLPIENTIDLYIAVLGSEANLAALDLAQSIRHQGFKVERDYLGRKIKAQFKSADTFNAKVIMTLGSSEVDSKEVGLKNNQTRQEVKVSFENIKTDFSSVLKQLGL

Atome Classification :

(23 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

HIS_A_3(4E51)
SYH_BURTA
[Raw transfer]



HIS_B_4(4E51)
SYH_BURTA
[Raw transfer]



CHAIN_G_6(1HTT)
SYH_ECOLI
[Raw transfer]
-
CHAIN_H_8(1HTT)
SYH_ECOLI
[Raw transfer]
-
CHAIN_F_4(1HTT)
SYH_ECOLI
[Raw transfer]
-
CHAIN_E_2(1HTT)
SYH_ECOLI
[Raw transfer]
-
CHAIN_E_2(1HTT)
SYH_ECOLI
[Raw transfer]
-
AMP_A_3(4RDX)
SYH_THET2
[Raw transfer]
41 HHSearch 92.8747%-107 - C1 -1QE0 - SYH_STAAU -
33 PsiBlast_CBE 91.7542%-111 - C1 -4E51 3.7 SYH_BURTA
1 PsiBlast_PDB 89.9548%-110 - C1 -1QE0 - SYH_STAAU -
6 PsiBlast_PDB 89.6942% -98 - C1 -4E51 3.1 SYH_BURTA
42 HHSearch 89.5539% -93 - C1 -1H4V - SYH_THET2 -
37 PsiBlast_CBE 89.1238% -94 - C1 -1ADJ - SYH_THET8 -
7 PsiBlast_PDB 88.9238% -91 - C1 -1ADJ - SYH_THET8 -
29 PsiBlast_CBE 88.8941%-101 - C1 -1HTT 3.1 SYH_ECOLI
40 HHSearch 88.8642% -95 - C1 -1HTT 3.4 SYH_ECOLI
38 PsiBlast_CBE 88.7938% -94 - C1 -1ADJ - SYH_THET8 -
35 PsiBlast_CBE 88.7538% -90 - C1 -1ADY - SYH_THET8 -
2 PsiBlast_PDB 88.5341% -96 - C1 -1KMM - SYH_ECOLI -
34 PsiBlast_CBE 88.4838% -88 - C1 -1ADY - SYH_THET8 -
24 PsiBlast_CBE 88.4141% -97 - C1 -1KMM - SYH_ECOLI -
39 PsiBlast_CBE 88.2738% -93 - C1 -1ADJ - SYH_THET8 -
27 PsiBlast_CBE 88.0341% -98 - C1 -1HTT 3.2 SYH_ECOLI
9 PsiBlast_PDB 88.0238% -96 - C1 -1H4V - SYH_THET2 -
32 PsiBlast_CBE 87.9841% -94 - C1 -2EL9 - SYH_ECOLI -
31 PsiBlast_CBE 87.7641% -95 - C1 -2EL9 - SYH_ECOLI -
36 PsiBlast_CBE 87.6038% -87 - C1 -1ADY - SYH_THET8 -
4 PsiBlast_PDB 87.4841% -95 - C1 -1HTT 3.4 SYH_ECOLI
28 PsiBlast_CBE 87.2741% -97 - C1 -1HTT 3.4 SYH_ECOLI
10 PsiBlast_PDB 86.5338% -92 - C1 -4RDX 6.7 SYH_THET2