@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : gbs2089: (2015-12-13 )
MTTLITTFQERFGDWTQSLIEHLQLSLLTLILATLIAIPLGIIISHYKKISHVVLQITGIFQTIPSLALLGLFIPFMGIGTVPAVVALIIYALFPILQNTVTVLMQIDANLIEAATAFGMTRWERLKKFELALSMPVIISGIRTASVMIIGTATLASLIGAGGLGSFILLGIDRNNPSLILIGAISSAVLAIIFSGLIGLLEKARLRTIAVSGILLLAGLGLSYAPKWMPGTNTATITVAGKLGTEPDILINMYKELIEDQTDIKVKLKPNFGKTTFLYQALKSGDIDLYPEFTGTITSSLLKNPPKVSNNPKQVYNLAKNGILKQDKLSLLSPMAYQNTYAVAVKKDYAEANQLKNISDLKKLDKLKAGFTLEFKDREDGSIGLQKHYGLNLDISTLEPALRYQAINSKDVNIIDAYSTDSELIQYQLQILKDDKHLFPPYQGAPLLRQDTIKKYPQVKKALNKLAGHITEKEMQEMNYQVAVKHKSAATVAKQYLKAHHIIK

Atome Classification :

(22 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

PBE_A_9(1SW1)
?
[Raw transfer]




BTB_A_2(4NE4)
?
[Raw transfer]




PGE_A_3(3O66)
?
[Raw transfer]




EDO_A_7(3MAM)
?
[Raw transfer]




1 PsiBlast_PDB 89.9534% -43 - C2 -3PPN - OPUCC_BACSU -
24 PsiBlast_CBE 87.9834% -46 - C2 -3PPO - OPUCC_BACSU -
21 PsiBlast_CBE 87.8034% -46 - C2 -3PPR - OPUCC_BACSU -
23 PsiBlast_CBE 87.2134% -47 - C2 -3PPP - OPUCC_BACSU -
5 PsiBlast_PDB 87.0834% -45 - C2 -3PPR - OPUCC_BACSU -
2 PsiBlast_PDB 86.8234% -45 - C2 -3PPO - OPUCC_BACSU -
4 PsiBlast_PDB 86.5134% -46 - C2 -3PPQ - OPUCC_BACSU -
3 PsiBlast_PDB 85.8434% -45 - C2 -3PPP - OPUCC_BACSU -
12 PsiBlast_PDB 85.8131% -45 - C2 -3R6U - OPUBC_BACSU -
22 PsiBlast_CBE 85.7534% -46 - C2 -3PPQ - OPUCC_BACSU -
34 HHSearch 85.0131% -47 - C2 -3R6U - OPUBC_BACSU -
28 PsiBlast_CBE 84.8133% -44 - C2 -1SW4 - ? -
32 HHSearch 84.7332% -47 - C2 -3O66 - ? -
30 HHSearch 84.4534% -48 - C2 -1SW5 - ? -
6 PsiBlast_PDB 84.3833% -45 - C2 -1SW4 - ? -
50 Fugue 84.1934% -48 - C2 -1SW5 - ? -
8 PsiBlast_PDB 83.9033% -43 - C2 -1SW2 - ? -
7 PsiBlast_PDB 83.8533% -47 - C2 -1SW5 - ? -
9 PsiBlast_PDB 83.3733% -49 - C2 -3MAM 2.4 ?
14 PsiBlast_PDB 83.2927% -48 - C2 -4NE4 2.6 ?
10 PsiBlast_PDB 82.8932% -45 - C2 -1SW1 4.0 ?
11 PsiBlast_PDB 82.5433% -45 - C2 -3O66 1.8 ?