@TOME V2.3
(Nov 2016)

Ref. - - Doc.
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : bsu10790: (2016-06-16 )
MCGITGWVDFKKQLVQEKQTMDRMTDTLSKRGPDDSNVWGEHHVLFGHKRLAVVDIEGGRQPMACTYKGDTYTIIYNGELYNTEDLRKELRARGHQFERTSDTEVLLHSYIEWQEDCVDHLNGIFAFAVWDEKRNLLFAARDRLGVKPFFYTKEGSSFLFGSEIKAILAHPDIKARVDRTGLSEIFGLGPSRTPGTGIFKGIKEIRPAHALTFSKDGLNIWRYWNVESEKHTDSFDDTVANVRSLFQDAVTRQLVSDVPVCTFLSGGLDSSAITAIAAGHFEKEGKAPLHTYSIDYEENDKYFQASAFQPNDDGPWIEKMTEAFGTTHHKCVISQKDLVDHLEEAVLVKDLPGMADVDSSLLWFCREIKKDFVVSLSGECADEIFGGYPWFHTADVESGFPWMRSTEERIKLLSDSWQKKLNLKEYVNAKYEETLAETPLLDGETGVDKARRQLFYLNMLWFMTNLLDRKDRMSMGASLEVRVPFADHRLVEYVWNIPWEMKMHDNREKGILRKALEGILPDDILYRKKSPYPKTHHPEYTKGVSEWLKTIRSQKDSVLHTLLDRKQLDQLLETEGSSFKVPWFGQLMKGPQLIAHLAQIHTWFEAYRIDIDER

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

POP_A_8(3FIU)
?
[Raw transfer]
1 PsiBlast_PDB 96.8126% 0 - C- -1CT9 - ASNB_ECOLI -
49 Fugue 95.3026% 0 - C- -1CT9 - ASNB_ECOLI -
48 Fugue 93.1426% 0 - C- -1CT9 - ASNB_ECOLI -
22 HHSearch 92.6129% 0 - C- -1CT9 - ASNB_ECOLI -
47 Fugue 69.3918% -70 * C4 *1JGT - BLS_STRCL -
50 Fugue 66.6017% -69 - C4 -1Q19 - CARA_PECCC -
51 Fugue 54.8225% 0 - C- -1CT9 - ASNB_ECOLI -
8 PsiBlast_PDB 53.5725%-107 - C3 -1MC1 - BLS_STRCL -
6 PsiBlast_PDB 52.5625%-109 - C3 -1MB9 - BLS_STRCL -
5 PsiBlast_PDB 51.9125%-107 - C3 -1M1Z - BLS_STRCL -
7 PsiBlast_PDB 51.4425%-103 - C3 -1MBZ - BLS_STRCL -
27 HHSearch 51.1524%-106 - C3 -1ECF - PUR1_ECOLI -
4 PsiBlast_PDB 50.6725%-102 - C3 -1JGT - BLS_STRCL -
25 HHSearch 49.4823%-104 - C3 -1XFF - GLMS_ECOLI -
10 PsiBlast_PDB 49.0230%-203 - C3 -3OOJ - GLMS_ECOLI -
15 PsiBlast_PDB 48.7230%-168 - C3 -1XFG - GLMS_ECOLI -
13 PsiBlast_PDB 48.6530%-191 - C3 -2J6H - GLMS_ECOLI -
14 PsiBlast_PDB 47.8330%-178 - C3 -1XFF - GLMS_ECOLI -
11 PsiBlast_PDB 46.9630%-190 - C3 -4AMV - GLMS_ECOLI -
30 HHSearch 46.0326%-102 - C3 -4AMV - GLMS_ECOLI -