@TOME V2.3
(Nov 2016)

Ref. - - Doc.
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Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : bsu14770: (2016-06-23 )
MKLRNDLRNIAIIAHVDHGKTTLVDQLLHQAGTFRANEQVAERAMDSNDLERERGITILAKNTAINYKDTRINILDTPGHADFGGEVERIMKMVDGVVLVVDAYEGCMPQTRFVLKKALEQNLNPVVVVNKIDRDFARPEEVIDEVLDLFIELDANEEQLEFPVVYASAINGTASLDPKQQDENMEALYETIIKHVPAPVDNAEEPLQFQVALLDYNDYVGRIGIGRVFRGTMKVGQQVSLMKLDGTAKSFRVTKIFGFQGLKRVEIEEAKAGDLVAVSGMEDINVGETVCPVDHQDPLPVLRIDEPTLQMTFVVNNSPFAGREGKYVTARKIEERLQSQLQTDVSLRVEPTASPDAWVVSGRGELHLSILIENMRREGYELQVSKPEVIIKEIDGVRCEPVERVQIDVPEEHTGSVMESMGARKGEMVDMINNGNGQVRLIFTVPSRGLIGYSTEFLSLTRGFGILNHTFDSYQPMQAGQVGGRRQGVLVSMENGKATSYGIQGIEDRGVIFVEPGTEVYEGMIVGEHNRDNDLVVNVSKMKQQTNVRSATKDQTTTIKKARIMSLEESLEYLNEDEYCEVTPESIRLRKKILNKNEREKAAKKKKTAGLS

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

GTP_A_3(4TMX)
IF2P_CHATD
[Raw transfer]



GDP_B_2(1G7S)
IF2P_METTH
[Raw transfer]
77 HHSearch 86.3355% -81 - C2 -4ZCI - TYPA_ECOLI -
23 PsiBlast_CBE 85.5455% -83 - C2 -4ZCI - TYPA_ECOLI -
4 PsiBlast_PDB 84.4955% -83 - C2 -4ZCI - TYPA_ECOLI -
21 PsiBlast_CBE 83.5654% -81 - C2 -4ZCM - TYPA_ECOLI -
22 PsiBlast_CBE 83.4055% -82 - C2 -4ZCL - TYPA_ECOLI -
1 PsiBlast_PDB 82.7154% -82 * C2 *4ZCM - TYPA_ECOLI -
5 PsiBlast_PDB 82.2455% -83 - C2 -4ZCL - TYPA_ECOLI -
2 PsiBlast_PDB 75.1454% -68 - C4 -5A9W - TYPA_ECOLI -
3 PsiBlast_PDB 73.7754% -62 - C4 -5A9X - TYPA_ECOLI -
82 HHSearch 69.9830% -77 - C3 -2XEX - EFG_STAAU -
91 HHSearch 66.0624%-108 - C3 -3JB9 - SN114_SCHPO -
87 HHSearch 63.6825% -83 - C3 -2DY1 - ? -
90 HHSearch 62.6424% - * C3 *3JCR - ? -
8 PsiBlast_PDB 60.4529% -83 - C2 -3DEG - LEPA_ECOLI -
7 PsiBlast_PDB 59.2629% -97 - C3 -3CB4 - LEPA_ECOLI -
92 HHSearch 58.9928% -92 - C3 -5ANB - ETUD1_HUMAN -
107 Fugue 57.9126%-100 - C3 -3CB4 - LEPA_ECOLI -
95 HHSearch 56.0724%-104 - C3 -3VQT - RF3_DESVM -
94 HHSearch 54.9423% -96 - C3 -2H5E - RF3_ECOLI -
89 HHSearch 52.8521% -86 - C3 -5GAN - SN114_YEAST -