@TOME V2.3
(Nov 2016)

Ref. - - Doc.
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : bsu15430: (2016-06-24 )
MDFKDTLLMPKTDFPMRGNLPNREPDIQKKWEEEDIYRLVQERTKDRPKFVLHDGPPYANGDIHMGHALNKILKDFIVRYKSMSGYNAPYVPGWDTHGLPIETALTKNKKVNRKEMSVAEFRKLCEEYAWKQIEGQREQFKRLGVRGDWENPYVTLKPEYEAQQIRVFGEMAKRGYIYKGLKPVNWSPSSESALAEAEIEYQDKRSASIYVAFGVKDGKGVLENGERIIIWTTTPWTIPANLGISVHPDLEYSVIAVGEDRFVVASALVENVASACGFDQYEVTRTVKGKDLENIIAEHPLYGRDSLVMLGEHVTTDAGTGCVHTAPGHGEDDFIIGQKYGLDVLCPVDEKGVMTSEAPGFEGMFYDDANKAITQQLDEKGALVKLEFITHSYPHDWRTKKPTIFRATAQWFASIKDFRSDLLDAIKETKWVPEWGEQRLHNMVRDRGDWCISRQRAWGVPIPVFYAENGEPVITDETIEHVSELFRQHGSNIWFEKEAKDLLPEGFTHPGSPNGTFTKEQDIMDVWFDSGSSHQAVLEERDDLVRPADLYLEGSDQYRGWFNSSLSTAVAVTGKAPYKGVLSHGFALDGEGRKMSKSIGNVVVPAKVMKQLGADILRLWVSSVDYQADVRVSDAILKQVAEVYRKIRNTFRFLHGNLFDFDPKTNAVAVEDLREVDQYMLIKLNKLIDKVKKAYDEYEFAVVYHSIHNFCTIELSSFYLDFAKDIVYIEHADHPDRRSMQTVFYETLLALVKLSAPILPHTADELWSHLTFVEEQSVQLTDMPETITVPNSEATEEKFDRFMALRDDVLKALETARNEKIIGKSLEANLKLYPNKENKELLASIKENLSQLFIVSELTISEENEAPNDAQSFATGKIAVEKAEGEMCERSRVISKDVGANPKYPTLSLRNAEIVEKYYQK

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

MRC_A_16(1QU2)
SYI1_STAAU
[Raw transfer]



MRC_A_16(1FFY)
SYI1_STAAU
[Raw transfer]



ILA_A_4(1JZQ)
SYI_THET8
[Raw transfer]



MRC_A_16(1FFY)
SYI1_STAAU
[Raw transfer]



MRC_A_16(1QU2)
SYI1_STAAU
[Raw transfer]



MRC_A_4(1QU3)
SYI1_STAAU
[Raw transfer]



MRC_A_4(1JZS)
SYI_THET8
[Raw transfer]
52 HHSearch 83.3862% -69 - C1 -1FFY Error SYI1_STAAU
3 PsiBlast_PDB 83.3161% -70 - C1 -1FFY Error SYI1_STAAU
1 PsiBlast_PDB 83.3161% -70 - C1 -1QU2 Error SYI1_STAAU
42 Fugue 82.9861% -68 - C1 -1QU2 Error SYI1_STAAU
2 PsiBlast_PDB 80.9761% -77 - C1 -1QU3 Error SYI1_STAAU
4 PsiBlast_PDB 70.1531% -85 - C1 -1JZQ 6.0 SYI_THET8
5 PsiBlast_PDB 69.7631% -85 - C1 -1JZS 7.4 SYI_THET8
6 PsiBlast_PDB 69.6731% -84 - C1 -1ILE - SYI_THET8 -
54 HHSearch 66.1030% -82 - C1 -1ILE - SYI_THET8 -
53 HHSearch 62.1426% -76 - C1 -1GAX - SYV_THETH -
44 Fugue 61.4624% -70 - C1 -1GAX - SYV_THETH -
8 PsiBlast_PDB 61.2925% -70 - C1 -1IVS - SYV_THETH -
7 PsiBlast_PDB 61.0125% -70 - C1 -1GAX - SYV_THETH -
20 PsiBlast_PDB 59.9922% -84 - C1 -1WKB - SYL_PYRHO -
59 HHSearch 58.6823% -83 - C1 -2V0C - ? -
10 PsiBlast_PDB 58.4922% -80 - C1 -1WZ2 - SYL_PYRHO -
9 PsiBlast_PDB 58.4425% - - C1 -1IYW - SYV_THETH -
55 HHSearch 57.6722% -86 - C1 -1WZ2 - SYL_PYRHO -
13 PsiBlast_PDB 57.5223% -88 - C1 -4ARI - SYL_ECOLI -
56 HHSearch 57.1022% -86 - C1 -1WKB - SYL_PYRHO -