@TOME V2.3
(Nov 2016)

Ref. - - Doc.
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : bsu15870: (2016-06-25 )
MKQHQQTSIANIKGIGPETEKTLNELGIYDISDLLNYFPYRYDDYELRDLEEVKHDERVTVEGKVHSEPSLTYYGKKRNRLTFRLLVGHYLITAVCFNRPYLKKKLSLGSVVTVSGKWDKHRQTISVQELKNGPHQEDKSIEPVYSVKENVTVKMMRRFIQQALTQYADSLPDPLPEKLRKSYKLPDYYQALKAMHQPETREALKLARRRFVYEEFLLFQLKMQAFRKAEREQTQGIRQRFSNEELMRFIKSLPFPLTNAQSRVLREITADMSSPYRMNRLLQGDVGSGKTAVAAIALYAAILSGYQGALMVPTEILAEQHADSLVSLFEKWDVSVALLTSSVKGKRRKELLERLAAGEIDILVGTHALIQDEVEFKALSLVITDEQHRFGVEQRKKLRNKGQDPDVLFMTATPIPRTLAITVFGEMDVSVIDEMPAGRKRIETYWVKHDMLDRILAFVEKELKQGRQAYIICPLIEESDKLDVQNAIDVYNMLSDIFRGKWNVGLMHGKLHSDEKDQVMREFSANHCQILVSTTVVEVGVNVPNATIMVIYDADRFGLSQLHQLRGRVGRGEHQSFCILMADPKSETGKERMRIMSETNDGFELSEKDLELRGPGDFFGKKQSGMPEFKVADMVHDYRALETARQDAANLVASDAFWKEPEYAVLRDELLKSGVMDGEKLS

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ADP_A_5(1GM5)
?
[Raw transfer]
1 PsiBlast_PDB 82.1643% -97 - C1 -1GM5 - ? -
34 HHSearch 82.0143%-100 - C1 -1GM5 5.4 ?
35 HHSearch 64.6236%-136 - C1 -2EYQ - MFD_ECOLI -
2 PsiBlast_PDB 63.1236%-128 - C1 -2EYQ - MFD_ECOLI -
21 PsiBlast_CBE 59.2036%-127 - C1 -2EYQ - MFD_ECOLI -
53 HHSearch 53.1620%-156 - C1 -1XTI - DX39B_HUMAN -
24 Fugue 52.2828% -89 - C1 -2EYQ - MFD_ECOLI -
52 HHSearch 51.3120%-138 - C1 -4Q48 - ? -
54 HHSearch 51.0420%-145 - C1 -4LJY - PRP5_YEAST -
49 HHSearch 48.1617%-133 - C1 -3SQW - MS116_YEAST -
47 HHSearch 47.8818%-145 - C1 -5ANR - DDX6_HUMAN -
38 HHSearch 47.6017%-134 * C1 *3I5X - MS116_YEAST -
41 HHSearch 47.3717%-127 - C1 -4PXA - DDX3X_HUMAN -
51 HHSearch 47.0118%-142 - C1 -2V1X - RECQ1_HUMAN -
42 HHSearch 46.6419%-138 - C1 -4W7S - PRP28_YEAST -
37 HHSearch 46.2121%-146 - C1 -3EIQ - IF4A1_HUMAN -
55 HHSearch 44.7622%-137 - C1 -1OYW - RECQ_ECOLI -
44 HHSearch 44.4315%-128 - C1 -2DB3 - VASA1_DROME -
50 HHSearch 43.9221%-135 - C1 -1S2M - DHH1_YEAST -
43 HHSearch 40.7119%-120 - C1 -4D25 - ? -