@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : bsu16710: (2016-06-26 )
MIKRYTCQNGVRIVLENNPTVRSVAIGVWIGTGSRHETPEINGISHFLEHMFFKGTSTKSAREIAESFDRIGGQVNAFTSKEYTCYYAKVLDEHANYALDVLADMFFHSTFDENELKKEKNVVYEEIKMYEDAPDDIVHDLLSKATYGNHSLGYPILGTEETLASFNGDSLRQYMHDYYTPDRVVISVAGNISDSFIKDVEKWFGSYEAKGKATGLEKPEFHTEKLTRKKETEQAHLCLGFKGLEVGHERIYDLIVLNNVLGGSMSSRLFQDVREDKGLAYSVYSYHSSYEDSGMLTIYGGTGANQLQQLSETIQETLATLKRDGITSKELENSKEQMKGSLMLSLESTNSKMSRNGKNELLLGKHKTLDEIINELNAVNLERVNGLARQLFTEDYALALISPSGNMPS

Atome Classification :

(26 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

CHAIN_C_3(3HDI)
?
[Raw transfer]
-
CHAIN_D_4(2WC0)
IDE_HUMAN
[Raw transfer]
-
CHAIN_F_6(2WBY)
IDE_HUMAN
[Raw transfer]
-
CHAIN_F_6(2WC0)
IDE_HUMAN
[Raw transfer]
-
CHAIN_D_4(3HDI)
?
[Raw transfer]
-
CHAIN_D_4(3HDI)
?
[Raw transfer]
-
CHAIN_C_3(2WBY)
IDE_HUMAN
[Raw transfer]
-
CHAIN_C_3(2WK3)
IDE_HUMAN
[Raw transfer]
-
CHAIN_D_4(2WK3)
IDE_HUMAN
[Raw transfer]
-
21 PsiBlast_CBE 95.4464% -84 * C2 *3HDI 4.4 ?
1 PsiBlast_PDB 94.6364% -80 - C2 -3HDI 2.8 ?
97 HHSearch 93.1463% -79 - C2 -3HDI 2.2 ?
19 PsiBlast_PDB 77.5125% -94 - C2 -3L72 - ? -
16 PsiBlast_PDB 76.8725% -96 - C2 -3H1L - ? -
18 PsiBlast_PDB 76.6525% -95 - C2 -3L71 - ? -
15 PsiBlast_PDB 76.4325% -96 - C2 -3H1K - ? -
107 HHSearch 76.1325% -84 - C2 -1HR6 - MPPA_YEAST -
17 PsiBlast_PDB 75.6425% -95 - C2 -3L70 - ? -
12 PsiBlast_PDB 75.5425% -92 - C2 -3H1H - ? -
13 PsiBlast_PDB 75.4825% -93 - C2 -3H1I - ? -
20 PsiBlast_PDB 74.9225% -93 - C2 -3L73 - ? -
11 PsiBlast_PDB 74.2525% -94 - C2 -3CWB - ? -
14 PsiBlast_PDB 74.1525% -89 - C2 -3H1J - ? -
6 PsiBlast_PDB 73.3431% -86 - C2 -3EOQ - ? -
8 PsiBlast_PDB 72.7123% -89 - C2 -1BCC - QCR1_BOVIN (first) -
3 PsiBlast_PDB 71.9126% -77 - C2 -1HR7 - MPPB_YEAST -
100 HHSearch 71.5625% -75 - C2 -1HR6 - MPPB_YEAST -
5 PsiBlast_PDB 71.5226% -77 - C2 -1HR9 - MPPB_YEAST -
10 PsiBlast_PDB 71.5123% -85 - C2 -2BCC - QCR1_BOVIN -
40 PsiBlast_CBE 53.8431% -76 - C2 -2WK3 6.5 IDE_HUMAN
84 PsiBlast_CBE 53.0631% -77 - C2 -2WBY 2.7 IDE_HUMAN
82 PsiBlast_CBE 51.6231% -78 - C2 -2WC0 3.7 IDE_HUMAN (first)
81 PsiBlast_CBE 51.3831% -77 - C2 -2WC0 2.4 IDE_HUMAN
83 PsiBlast_CBE 51.3231% -78 - C2 -2WBY 2.5 IDE_HUMAN
39 PsiBlast_CBE 50.3031% -76 - C2 -2WK3 6.6 IDE_HUMAN