@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : bsu22120: (2016-07-04 )
MKKKTTGHTTIKDVAECAGVSKSTVSRYINGKIDAISPEKVKNIKKAIAELNYRPSKMAQGLKIKKSKLIGFVVADITNPFSVAAFRGVEEVCDQYGYSIMVCNTDNSPEKEREMLLKLEAHSVEGLILNATGENKDVLRAFAEQQIPTILIDRKLPDLKLDTVTTDNRWITKEILQKVYSKGYTDVALFTEPISSISPRAERAAVYQEMASVQNVNGLVRLHEIDVKDKEQLKAELRSFHKEMPEQKKAILALNGLIMLKIISCMEELGLRIPQDIGIAGFDDTEWYKLIGPGITTIAQPSHDMGRTAMERVLKRIEGDKGAPQTIELEAKVIMRKSL

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NACID_E_5(3OQN)
CCPA_BACSU
[Raw transfer]
-
NACID_B_6(3OQM)
CCPA_BACSU
[Raw transfer]
-
2 PsiBlast_PDB 82.7328% -63 - C1 -3OQM 3.8 CCPA_BACSU
3 PsiBlast_PDB 82.1328% -66 - C1 -3OQN 4.0 CCPA_BACSU
1 PsiBlast_PDB 81.2428% -65 - C1 -3OQO - CCPA_BACSU -
4 PsiBlast_PDB 76.3426% -40 - C1 -1ZVV - CCPA_BACSU -
19 PsiBlast_PDB 75.4426% -23 - C1 -1QPZ - PURR_ECOLI -
7 PsiBlast_PDB 74.9226% -24 - C1 -2PUA - PURR_ECOLI -
9 PsiBlast_PDB 74.6926% -22 - C1 -2PUC - PURR_ECOLI -
6 PsiBlast_PDB 74.4826% -17 - C1 -1JH9 - PURR_ECOLI -
18 PsiBlast_PDB 74.4326% -24 - C1 -1QP4 - PURR_ECOLI -
17 PsiBlast_PDB 74.3726% -22 - C1 -1QP0 - PURR_ECOLI -
16 PsiBlast_PDB 74.3326% -24 - C1 -1WET - PURR_ECOLI -
11 PsiBlast_PDB 74.1426% -23 - C1 -2PUE - PURR_ECOLI -
12 PsiBlast_PDB 74.0626% -21 - C1 -2PUF - PURR_ECOLI -
8 PsiBlast_PDB 74.0326% -19 - C1 -2PUB - PURR_ECOLI -
53 HHSearch 73.8726% -21 - C1 -1QPZ - PURR_ECOLI -
10 PsiBlast_PDB 73.6626% -23 - C1 -2PUD - PURR_ECOLI -
14 PsiBlast_PDB 73.2626% -19 - C1 -1PNR - PURR_ECOLI -
15 PsiBlast_PDB 73.2126% -19 - C1 -1BDI - PURR_ECOLI -
13 PsiBlast_PDB 73.2126% -22 - C1 -2PUG - PURR_ECOLI -
20 PsiBlast_PDB 72.9426% -20 - C1 -1ZAY - PURR_ECOLI -