@TOME V2.3
(Nov 2016)

Ref. - - Doc.
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : bsu25450: (2016-07-10 )
MKWSELSIHTTHEAVEPISNILHEAGASGVVIEDPLDLIKERENVYGEIYQLDPNDYPDEGVIVKAYLPVNSFLGETVDGIKETINNLLLYNIDLGRNHITISEVNEEEWATAWKKYYHPVKISEKFTIVPTWEEYTPVHTDELIIEMDPGMAFGTGTHPTTVLCIQALERFVQKGDKVIDVGTGSGILSIAAAMLEAESVHAYDLDPVAVESARLNLKLNKVSDIAQVKQNNLLDGIEGEHDVIVANILAEVILRFTSQAYSLLKEGGHFITSGIIGHKKQEVKEALEQAGFTIVEILSMEDWVSIIAKK

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

SAH_A_3(3EGV)
PRMA_THET8
[Raw transfer]



SAM_C_3(2NXE)
PRMA_THET8
[Raw transfer]



SAH_A_9(3CJQ)
PRMA_THET8
[Raw transfer]



SAM_A_2(2ZBP)
PRMA_THET8
[Raw transfer]



SAH_G_13(3CJQ)
PRMA_THET8
[Raw transfer]



SAH_A_3(3EGV)
PRMA_THET8
[Raw transfer]



4MM_B_9(3EGV)
PRMA_THET8
[Raw transfer]



GOL_B_5(3GRZ)
PRMA_LACDB
[Raw transfer]
1 PsiBlast_PDB 90.1443%-129 * C3 *3GRZ - PRMA_LACDB -
133 Fugue 90.1031% -87 - C3 -1UFK - PRMA_THET8 -
21 PsiBlast_CBE 88.3443%-128 - C3 -3GRZ 3.1 PRMA_LACDB
131 Fugue 86.5831%-100 - C3 -3EGV 5.5 PRMA_THET8
111 HHSearch 83.1742% -81 - C3 -3GRZ - PRMA_LACDB -
110 HHSearch 78.6934% -54 - C3 -2NXC - PRMA_THET8 -
8 PsiBlast_PDB 77.6334% -65 - C3 -2ZBP 6.6 PRMA_THET8
2 PsiBlast_PDB 76.8634% -67 - C3 -1UFK - PRMA_THET8 -
3 PsiBlast_PDB 76.4834% -70 - C3 -2NXE 7.0 PRMA_THET8
10 PsiBlast_PDB 76.2034% -66 - C3 -2ZBR - PRMA_THET8 -
5 PsiBlast_PDB 76.0834% -66 - C3 -2NXC - PRMA_THET8 -
9 PsiBlast_PDB 76.0034% -68 - C3 -2ZBQ - PRMA_THET8 -
7 PsiBlast_PDB 75.1234% -68 - C3 -3EGV 5.5 PRMA_THET8
24 PsiBlast_CBE 74.5833% -68 - C3 -3CJT - PRMA_THET8 -
28 PsiBlast_CBE 74.3833% -70 - C3 -3CJT - PRMA_THET8 -
26 PsiBlast_CBE 74.2233% -70 - C3 -3CJT - PRMA_THET8 -
23 PsiBlast_CBE 74.1133% -63 - C3 -3CJT - PRMA_THET8 -
6 PsiBlast_PDB 73.7334% -66 - C3 -3CJQ 4.9 PRMA_THET8
11 PsiBlast_PDB 73.2933% -67 - C3 -3CJT - PRMA_THET8 -
22 PsiBlast_CBE 72.4834% -66 - C3 -3CJQ 5.5 PRMA_THET8