@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : bsu27480: (2016-07-13 )
MQQHPDQLKLEEEPYLKGTVNTVIYHNDTNLYTVLKVKVTETSEAIEDKAVSVTGYFPALQEEETYTFYGKIVTHPKFGLQFQAEHFKKEIPTTKEGIIQYLSSDLFEGIGKKTAEEIVKKLGDSAINKILADASVLYDVPRLSKKKADTLAGALQRHQGLEQIMISLNQFGFGPQLSMKIYQAYESETLEKIQENPYQLVKDVEGIGFGKADELGSRMGLSGNHPERVKAAILYTLETTCLSEGHTYIETEQLIIDTQSLLNQSAREGQRITEMDAANAIIALGENKDIVIEDGRCYFPSLFYAEQNVAKRVKHIASQTEYENQFPESEFLLALGELEERMDVQYAPSQKEAIQKALSSPMLLLTGGPGTGKTTVIRGIVELYGELHGVSLDPSAYKKDEAFPIVLAAPTGRAAKRMSESTGLPAVTIHRLLGWNGAEGFTHTEDQPIEGKLLIIDEASMLDIWLANHLFKAIPDHIQIIIVGDEDQLPSVGPGQVLRDLLASQVIPTVRLTDIYRQAEGSSIVELAHQMKNGLLPNNLTAPTKDRSFIRCGGSQIKEVVEKVVANALKKGYTAKDIQVLAPMYRGKAGINELNVMLQDILNPPKEKRRELKFGDVVYRTGDKILQLVNQPENNVFNGDIGEITSIFYAKENTEKEDMAVVSFDGNEMTFTKKDFNQFTHAYCCSIHKSQGSEFPIVVLPVVKGYYRMLRRNLLYTAITRAKKFLILCGEEEALEWGVKNNDATVRQTSLKNRLSVQVEEMDAELEALQKELPFSVHDANIGMEGITPFDFMKEEQQ

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ANP_A_6(3GPL)
RECDL_DEIRA
[Raw transfer]
47 Fugue 72.9229% 2 - C1 -3E1S - RECDL_DEIRA -
57 HHSearch 72.5629% 2 - C1 -3E1S - RECDL_DEIRA -
3 PsiBlast_PDB 72.3228% 1 - C1 -3GPL 8.3 RECDL_DEIRA
1 PsiBlast_PDB 71.4928% 1 - C1 -3E1S - RECDL_DEIRA -
2 PsiBlast_PDB 71.4828% -4 - C1 -3GP8 - RECDL_DEIRA -
52 Fugue 64.4023% 32 - C1 -5EAN - DNA2_MOUSE -
58 HHSearch 58.9127% -9 - C1 -1W36 - RECD_ECOLI -
60 HHSearch 53.8222% -16 - C1 -5FTB - ? -
48 Fugue 48.6422% 14 - C1 -1W36 - RECD_ECOLI -
76 HHSearch 47.8423% -37 - C1 -1UAA - REP_ECOLI -
64 HHSearch 47.7021% -26 - C1 -2GK6 - RENT1_HUMAN -
62 HHSearch 47.6323% -25 - C1 -2XZL - NAM7_YEAST -
59 HHSearch 47.5120% 18 - C1 -3UPU - DDA_BPT4 -
63 HHSearch 46.1421% -29 - C1 -2WJY - RENT1_HUMAN -
13 PsiBlast_PDB 45.2223% -21 - C1 -5FHF - ? -
11 PsiBlast_PDB 44.2823% -24 - C1 -5FTF - ? -
75 HHSearch 44.0718% -34 - C1 -4C2T - ? -
9 PsiBlast_PDB 43.9323% -16 - C1 -5FTD - ? -
66 HHSearch 43.3519% -8 - C1 -4B3F - SMBP2_HUMAN -
7 PsiBlast_PDB 43.3023% -16 - C1 -5FTB - ? -