@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : bsu27500: (2016-07-13 )
MEKRPEDTRVVVGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDDTDENGFCTATEDYEDVIRVCNQIGIPYYAVNFEKQYYEKVFQYFLDEYKAGRTPNPDVLCNKEIKFKAFLEHALSLGADYLATGHYARVDRSGGKVRMLRGIDENKDQTYFLNQLTEDTLSKVMFPIGELQKSRVREIAKEAELATATKKDSTGICFIGERNFKTFLSQYLPAQPGDMMTMDGEVKGRHDGLMYYTIGQRHGLGIGGSGEPWFAVGKDLEKNILYVDQGFHNPLLYSDKITATNISWVRSDIMKGEEISCTAKFRYRQEDHKVTVRMTGEGEAEVIFDEQVRAVTPGQAVVFYDGEECLGGGTIDDVYKDGTKLWYV

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

AMP_C_7(2DEU)
MNMA_ECOLI
[Raw transfer]



AMP_D_8(2DEU)
MNMA_ECOLI
[Raw transfer]



SAM_A_3(2HMA)
MNMA_STRPN
[Raw transfer]



SAM_A_3(2HMA)
MNMA_STRPN
[Raw transfer]
47 HHSearch 76.2769% -33 - C1 -2HMA 7.9 MNMA_STRPN
1 PsiBlast_PDB 68.2066% -11 - C1 -2HMA 6.7 MNMA_STRPN
21 PsiBlast_CBE 66.3157% -3 - C1 -2DEU 4.8 MNMA_ECOLI
22 PsiBlast_CBE 65.7157% -13 - C1 -2DER - MNMA_ECOLI -
4 PsiBlast_PDB 65.1657% -3 - C1 -2DEU 4.9 MNMA_ECOLI
3 PsiBlast_PDB 64.9357% -11 - C1 -2DET - MNMA_ECOLI -
37 Fugue 63.8254% 0 - C1 -2DER - MNMA_ECOLI -
2 PsiBlast_PDB 63.8257% -3 - C1 -2DER - MNMA_ECOLI -
46 HHSearch 63.1456% 4 * C1 *2DER - MNMA_ECOLI -
12 PsiBlast_PDB 41.5059%-286 - C1 -2NZ2 - ASSY_HUMAN -
66 HHSearch 40.3624% -98 - C1 -2YWB - GUAA_THET8 -
8 PsiBlast_PDB 34.1327%-157 - C1 -3FIU - ? -
60 HHSearch 33.6622% -83 - C1 -2NZ2 - ASSY_HUMAN -
10 PsiBlast_PDB 32.4548%-232 - C1 -2YWC - GUAA_THET8 -
56 HHSearch 32.1720% -51 - C1 -1VL2 - ASSY_THEMA -
57 HHSearch 32.0816% -93 - C1 -3BL5 - QUEC_BACSU -
5 PsiBlast_PDB 31.1929%-128 - C1 -3VRH - ? -
18 PsiBlast_PDB 30.8522%-183 - C1 -3P52 - NADE_CAMJE -
55 HHSearch 30.7922% -52 - C1 -3VRH - ? -
52 HHSearch 30.6818% -24 - C1 -4XFJ - ? -