@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : bsu27540: (2016-07-13 )
MLHQFSRNELAIGKEGLETLKNSTVAVLGVGGVGSFAAEALARSGVGRILLVDKDDVDITNVNRQLHALLSTVGQPKVDLMKARIADINPECEVIALKMFYTEETYEQFFDYGLDYVIDASDTICYKIHLMKECLKRDIPLISSMGAANKTDPTRFQIADISKTHTDPIAKVVRTKLRKEGIKKGVQVIFSDESPIVIREDVRKEVGNDEAKIRKAKMPPSSNAFVPSVAGLIMGGHVVMDLLKDIEIKRVKDK

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ATP_A_6(4D79)
TCDA_ECOLI
[Raw transfer]



ATP_A_6(4D79)
TCDA_ECOLI
[Raw transfer]
22 PsiBlast_CBE 96.6740% 0 - C- -4D79 - TCDA_ECOLI -
21 PsiBlast_CBE 96.6740% 0 - C- -4D7A - TCDA_ECOLI -
131 HHSearch 73.8935% -70 - C1 -4D79 7.1 TCDA_ECOLI
121 Fugue 72.2136% 9 - C1 -4D79 7.1 TCDA_ECOLI
5 PsiBlast_PDB 58.3533%-131 - C2 -1JW9 - MOEB_ECOLI -
3 PsiBlast_PDB 58.3333%-134 - C2 -1JWB - MOEB_ECOLI -
148 HHSearch 58.2525%-113 - C1 -4NNJ - UBA1_YEAST -
125 Fugue 57.5420%-106 - C1 -1Y8Q - SAE2_HUMAN -
123 Fugue 56.5022% -19 - C1 -1JW9 - MOEB_ECOLI -
142 HHSearch 54.9424% -0 - C1 -3H5N - ? -
141 HHSearch 54.8223% -22 - C1 -1JW9 - MOEB_ECOLI -
146 HHSearch 52.9825% -90 - C1 -1Y8Q - SAE2_HUMAN -
126 Fugue 49.8718% -0 - C1 -3CMM - UBA1_YEAST -
140 HHSearch 48.4518% -51 - C1 -4GSL - ATG7_YEAST -
139 HHSearch 47.5122%-121 - C1 -4P22 - UBA1_HUMAN -
136 HHSearch 46.3521%-131 - C1 -1TT5 - UBA3_HUMAN -
138 HHSearch 46.1823% -17 - C1 -4II2 - UBA1_SCHPO -
145 HHSearch 46.0321%-136 * C1 *2NVU - UBA3_HUMAN -
133 HHSearch 45.7118% -40 - C1 -3RUI - -
4 PsiBlast_PDB 44.8433% 0 - C- -1JWA - MOEB_ECOLI -