@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : bsu31300: (2016-07-22 )
MLILQLIAIFVLIGITAVFVAAEFAIVKIRGSKINQLIESGDSRALAAHKIISNLDEYLSACQLGITITALGLGWLGEPTFERFLHPLFTMTGIPEPFNHIVTFVVAFIIVTFLHVVMGELAPKTVSIQKAEAVSLWIAKPLIWFYKITYPFIKALNGSASFLVKLFGFHSVKEHQVVISEEELRLILSESYEKGEINQSEFRYVNKIFEFDNRVAREIMIPRTEIAVISLEQSLEEAIHHIINERYTRYPVIKDDKDHILGIINSKDMFKAYFLGQPIKLNQIMRPVIRVIESIPVQQLLIRMQKERIHMAILVDEYGGTAGLVTVEDIIEEIVGEIRDEYDQDETPHILKKGEHHYVMDGKALIDEVNDLLDIAIENEEIDTIAGWLLTQKMELKAGDVIHAEGCEFKILDAEDHHIRFVEIKKTDF

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ADN_B_6(3OI8)
?
[Raw transfer]




AMP_A_5(3NQR)
CORC_SALTY
[Raw transfer]




AMP_A_5(3NQR)
CORC_SALTY
[Raw transfer]




AMP_A_3(3LFR)
?
[Raw transfer]




AMP_A_2(4HG0)
CORC_ECOLI
[Raw transfer]




AMP_A_2(4HG0)
CORC_ECOLI
[Raw transfer]




ADN_A_3(3OI8)
?
[Raw transfer]




AMP_B_4(3LFR)
?
[Raw transfer]




27 HHSearch 78.8232% -64 - C1 -4HG0 5.8 CORC_ECOLI
29 HHSearch 77.1436%-174 - C1 -3OI8 Error ?
3 PsiBlast_PDB 76.9135%-174 - C1 -3OI8 5.8 ?
2 PsiBlast_PDB 76.1431% -63 - C1 -4HG0 5.8 CORC_ECOLI
1 PsiBlast_PDB 68.3343%-161 - C1 -3LV9 - ? -
30 HHSearch 68.2443%-160 - C1 -3LV9 - ? -
7 PsiBlast_PDB 66.6036%-201 - C1 -3JTF - ? -
8 PsiBlast_PDB 65.4825%-196 - C1 -3LHH - ? -
40 HHSearch 64.6440%-135 - C1 -3NQR 5.4 CORC_SALTY
4 PsiBlast_PDB 63.0940%-130 - C1 -3NQR 5.4 CORC_SALTY
42 HHSearch 61.9438% -87 - C1 -3LFR 2.7 ?
6 PsiBlast_PDB 61.7537% -85 - C1 -3LFR 4.5 ?
9 PsiBlast_PDB 58.4227%-158 - C1 -3OCM - ? -
28 HHSearch 56.5626%-131 - C1 -3LHH - ? -
10 PsiBlast_PDB 56.5428%-131 - C1 -3I8N - ? -
20 PsiBlast_PDB 55.5325% -76 - C1 -4IY4 - CNNM2_HUMAN -
15 PsiBlast_PDB 53.5629% -59 - C1 -4IY3 - CNNM4_HUMAN -
31 HHSearch 52.9532%-101 - C- -3OCO - ? -
32 HHSearch 52.9424%-137 - C1 -3OCM - ? -
18 PsiBlast_PDB 52.8224% -97 - C1 -4P1G - -