@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : bsu36490: (2016-07-31 )
MMNTLNIDFQKTALVIIDLQKGIVPIDQSGQVVPNAKKLVDEFRKHNGFISFVNVAFHDGADALKPQTDEPAQGGSGEMPADWAEFVPEIGVQDGDYTVTKRQWGAFFGTDLDLQLRRRGIDTIVLCGIATNIGVESTAREAFQLGYQQIFITDAMSTFSDEEHEATLRFIFPRIGKSRTTEEFLEQVK

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

MPD_K_11(1J2R)
YECD_ECOLI
[Raw transfer]



MPD_N_14(1J2R)
YECD_ECOLI
[Raw transfer]



MPD_H_8(1J2R)
YECD_ECOLI
[Raw transfer]



MPD_E_5(1J2R)
YECD_ECOLI
[Raw transfer]



MPD_E_5(1J2R)
YECD_ECOLI
[Raw transfer]



MPD_E_5(1J2R)
YECD_ECOLI
[Raw transfer]



EDO_A_2(3TXY)
?
[Raw transfer]



EDO_A_2(3TXY)
?
[Raw transfer]
23 PsiBlast_CBE 84.9146% 2 - C5 -1J2R 2.5 YECD_ECOLI
21 PsiBlast_CBE 84.8446% -1 - C5 -1J2R 2.6 YECD_ECOLI
22 PsiBlast_CBE 84.4046% 1 - C5 -1J2R 2.6 YECD_ECOLI
1 PsiBlast_PDB 83.8246% 0 - C5 -1J2R 2.6 YECD_ECOLI
43 HHSearch 82.9746% 3 - C5 -1J2R 3.4 YECD_ECOLI
28 Fugue 82.7644% -33 - C5 -1J2R 2.6 YECD_ECOLI
2 PsiBlast_PDB 82.3249% -0 - C5 -3TXY 1.9 ?
49 HHSearch 80.7444% 12 - C5 -3TXY 2.0 ?
42 HHSearch 65.1924% -11 * C5 *1NF9 - ? -
3 PsiBlast_PDB 65.1228% 2 - C5 -3KL2 - ? -
27 Fugue 64.6723% -4 - C5 -1NF9 - ? -
11 PsiBlast_PDB 63.6027% -18 - C5 -3R77 - PHZD_PSEFL -
46 HHSearch 63.5825% -9 - C5 -3IRV - ? -
37 HHSearch 63.2028% 0 - C5 -3KL2 - ? -
39 HHSearch 62.1326% -11 - C5 -3HU5 - ? -
44 HHSearch 61.7422% -20 - C5 -3OT4 - ? -
19 PsiBlast_PDB 61.2930% -20 - C5 -3HU5 - ? -
50 HHSearch 60.9824% 15 - C5 -3MCW - ? -
47 HHSearch 60.9822% 19 - C5 -4L07 - ? -
4 PsiBlast_PDB 60.2731% -5 - C5 -3S2S - ? -