@TOME V2.3
(Nov 2016)

Ref. - - Doc.
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : bsu40100: (2016-08-06 )
MVLDANIKAQLNQYMQLIENDIVLKVSAGEDDTSKDMLALVDELASMSSKISVEKAELNRTPSFSVNRVGEDTGVTFAGIPLGHEFTSLVLALLQVSGRPPKVDQKVIDQVKKISGEYHFESYISLTCHNCPDVVQALNMMSVLNPNITHTMIDGAAYKAEVESKNIMAVPTVYLNGESFGSGRMTLEEILAKMGSGTDASEFADKEPFDVLVVGGGPAGASAAIYTARKGIRTGVVAERFGGQVLDTMSIENFISVKATEGPKLAASLEEHVKEYDIDVMNLQRAKRLEKKDLFELELENGAVLKSKTVILSTGARWRNVNVPGEQEFKNKGVAYCPHCDGPLFEGKDVAVIGGGNSGIEAAIDLAGIVNHVTVLEFAPELKADEVLQKRLYSLPNVTVVKNAQTKEITGDQSVNGITYVDRETGEEKHVELQGVFVQIGLVPNTEWLEGTVERNRMGEIIVDKHGATSVPGLFAAGDCTDSAYNQIIISMGSGATAALGAFDYLIRN

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

FAD_A_5(4O5U)
AHPF_ECOLI
[Raw transfer]



FAD_A_2(4O5Q)
AHPF_ECOLI
[Raw transfer]



FAD_A_2(4XVG)
?
[Raw transfer]



FAD_A_5(1HYU)
AHPF_SALTY
[Raw transfer]



FAD_A_2(4YKG)
AHPF_ECOLI
[Raw transfer]



FAD_A_5(1HYU)
AHPF_SALTY
[Raw transfer]



FAD_A_2(4YKF)
AHPF_ECOLI
[Raw transfer]
4 PsiBlast_PDB 84.7356% 2 - C2 -4XVG 13.2 ?
1 PsiBlast_PDB 84.7056% 4 - C2 -4O5Q 13.2 AHPF_ECOLI
2 PsiBlast_PDB 84.4256% 3 - C2 -4O5U 13.0 AHPF_ECOLI
5 PsiBlast_PDB 84.1456% 2 - C2 -4YKG 12.7 AHPF_ECOLI
3 PsiBlast_PDB 83.6456% 5 - C2 -4YKF 12.4 AHPF_ECOLI
120 Fugue 83.1656% 8 - C2 -1HYU 10.8 AHPF_SALTY
100 HHSearch 83.0957% 7 - C2 -1HYU - AHPF_SALTY -
6 PsiBlast_PDB 82.7655% 10 - C2 -1HYU 10.8 AHPF_SALTY
7 PsiBlast_PDB 66.5464% -4 - C2 -1FL2 - AHPF_ECOLI -
103 HHSearch 66.4465% -4 * C2 *1FL2 - AHPF_ECOLI -
23 PsiBlast_CBE 61.2935% -94 - C2 -3F8R - ? -
29 PsiBlast_CBE 60.7635% -95 - C2 -3F8D - ? -
25 PsiBlast_CBE 60.3435% -92 - C2 -3F8P - ? -
26 PsiBlast_CBE 60.2135% -96 - C2 -3F8P - ? -
8 PsiBlast_PDB 60.1435% -95 - C2 -3F8P - ? -
22 PsiBlast_CBE 60.0235% -95 - C2 -3F8R - ? -
28 PsiBlast_CBE 59.8935% -97 - C2 -3F8D - ? -
9 PsiBlast_PDB 59.8435% -94 - C2 -3F8R - ? -
12 PsiBlast_PDB 59.3835% -93 - C2 -3F8D - ? -
102 HHSearch 57.8735% -78 - C2 -3F8D - ? -