@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : bsu40360: (2016-08-07 )
MVDYEREEEHTTPEQPKRSKKGYFLSSLIGVIVGAVLMAFIMPYLSNEGLDTGALDQQQNNNGRESIRTVNVSVNNAVTKIVSNMSPAVVGVVNIQKSDIWGESGEAGSGSGVIYKKNDHSAYVVTNHHVIEGASQIEISLKDGSRVSADLVGSDQLMDLAVLRVKSDKIKAVADFGNSDKVKSGEPVIAIGNPLGLEFAGSVTQGVISGTERAIPVDSNGDGQPDWNAEVLQTDAAINPGNSGGALLNMDGKVIGINSMKIAESAVEGIGLSIPSKLVIPVIEDLERYGKVKRPFLGIEMKSLSDIASYHWDETLKLPKNVTNGAVVMGVDAFSPAGKAGLKELDVITEFDGYKVNDIVDLRKRLYQKKVGDRVKVKFYRGGKEKSVDIKLSSADQLGS

Atome Classification :

(22 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

GOL_B_11(3TJO)
HTRA1_HUMAN
[Raw transfer]



CHAIN_E_5(3QO6)
DEGP1_ARATH
[Raw transfer]
-
CHAIN_D_4(3QO6)
DEGP1_ARATH
[Raw transfer]
-
CHAIN_D_4(3QO6)
DEGP1_ARATH
[Raw transfer]
-
CHAIN_Z_25(3STJ)
DEGQ_ECOLI
[Raw transfer]
-
CHAIN_F_6(3QO6)
DEGP1_ARATH
[Raw transfer]
-
CHAIN_B_2(3NZI)
HTRA1_HUMAN
[Raw transfer]
-
61 Fugue 84.1535% -91 - C- -3PV2 - ? -
67 Fugue 70.5732% 21 - C2 -4FLN - DEGP2_ARATH -
75 HHSearch 69.8939% 26 - C2 -3QO6 4.1 DEGP1_ARATH
1 PsiBlast_PDB 69.3037% 32 - C2 -3QO6 3.2 DEGP1_ARATH
22 PsiBlast_CBE 68.5337% 28 - C2 -3QO6 3.5 DEGP1_ARATH
21 PsiBlast_CBE 67.6437% 32 - C2 -3QO6 3.4 DEGP1_ARATH
78 HHSearch 67.0030% -66 - C2 -1LCY - HTRA2_HUMAN -
35 PsiBlast_CBE 65.6537% -36 - C2 -3PV3 - ? -
70 HHSearch 65.6335% -24 - C2 -3STJ 4.7 DEGQ_ECOLI
34 PsiBlast_CBE 65.5037% -46 - C2 -3PV3 - ? -
4 PsiBlast_PDB 63.7738% - - C2 -4A9G - DEGQ_ECOLI -
79 HHSearch 62.7535% - - C2 -4A8C - DEGQ_ECOLI -
7 PsiBlast_PDB 62.5235% -7 - C2 -4YNN - ? -
6 PsiBlast_PDB 62.2737% -33 - C2 -3PV3 - ? -
3 PsiBlast_PDB 61.9838% - - C2 -4A8C - DEGQ_ECOLI -
80 HHSearch 61.9631% 22 - C2 -4FLN - DEGP2_ARATH -
5 PsiBlast_PDB 61.3437% -42 - C- -3PV2 - ? -
71 HHSearch 61.0632% -5 - C2 -1Y8T - ? -
36 PsiBlast_CBE 61.0037% -42 - C2 -3PV3 - ? -
2 PsiBlast_PDB 60.9838% 13 - C2 -3STJ - DEGQ_ECOLI -
16 PsiBlast_PDB 53.7432% -65 - C2 -3NZI 6.1 HTRA1_HUMAN
47 PsiBlast_CBE 52.6333% -79 - C2 -3TJO 2.6 HTRA1_HUMAN