@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Rv0015c: (2016-04-18 )
MSPRVGVTLSGRYRLQRLIATGGMGQVWEAVDNRLGRRVAVKVLKSEFSSDPEFIERFRAEARTTAMLNHPGIASVHDYGESQMNGEGRTAYLVMELVNGEPLNSVLKRTGRLSLRHALDMLEQTGRALQIAHAAGLVHRDVKPGNILITPTGQVKITDFGIAKAVDAAPVTQTGMVMGTAQYIAPEQALGHDASPASDVYSLGVVGYEAVSGKRPFAGDGALTVAMKHIKEPPPPLPPDLPPNVRELIEITLVKNPAMRYRSGGPFADAVAAVRAGRRPPRPSQTPPPGRAAPAAIPSGTTARVAANSAGRTAASRRSRPATGGHRPPRRTFSSGQRALLWAAGVLGALAIIIAVLLVIKAPGDNSPQQAPTPTVTTTGNPPASNTGGTDASPRLNWTERGETRHSGLQSWVVPPTPHSRASLARYEIAQ

Atome Classification :

(21 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ACP_A_2(1O6Y)
PKNB_MYCTU
[Raw transfer]



AGS_A_2(3ORM)
?
[Raw transfer]



AGS_A_2(3ORO)
?
[Raw transfer]



AGS_A_2(3ORK)
?
[Raw transfer]



AGS_A_2(3ORP)
?
[Raw transfer]



ADP_A_2(3F61)
PKNB_MYCTU
[Raw transfer]



AGS_A_2(3ORT)
?
[Raw transfer]



MIX_E_5(2FUM)
PKNB_MYCTU
[Raw transfer]



MIX_G_7(2FUM)
PKNB_MYCTU
[Raw transfer]



CHAIN_K_6(3MVJ)
KAPCA_HUMAN
[Raw transfer]
-
1 PsiBlast_PDB 97.79100% -87 - C1 -4OW8 - PKNA_MYCTU -
29 HHSearch 96.98100% -90 - C1 -4OW8 - PKNA_MYCTU -
25 PsiBlast_CBE 69.5534% -79 - C1 -4EQM - ? -
26 PsiBlast_CBE 69.2634% -81 - C1 -4EQM - ? -
10 PsiBlast_PDB 67.5134% -80 - C1 -4EQM - ? -
24 PsiBlast_CBE 67.4534% -79 - C1 -4EQM - ? -
22 PsiBlast_CBE 67.4034% -79 - C1 -4EQM - ? -
23 PsiBlast_CBE 66.7834% -77 - C1 -4EQM - ? -
2 PsiBlast_PDB 64.8041% -76 - C1 -3ORK 5.8 ?
9 PsiBlast_PDB 64.6741% -76 - C1 -3F61 4.9 PKNB_MYCTU
6 PsiBlast_PDB 64.4143% -77 - C1 -1O6Y 5.0 PKNB_MYCTU
3 PsiBlast_PDB 63.9541% -70 - C1 -3ORO 6.4 ?
21 PsiBlast_CBE 61.8243% -77 - C1 -2FUM 4.4 PKNB_MYCTU
5 PsiBlast_PDB 61.5441% -71 - C1 -3ORT 5.3 ?
4 PsiBlast_PDB 61.5041% -71 - C1 -3ORP 5.1 ?
8 PsiBlast_PDB 61.4041% -72 - C1 -3ORM 6.7 ?
35 HHSearch 59.7124% -73 - C1 -4FR4 - ST32A_HUMAN -
7 PsiBlast_PDB 59.5543% -69 - C1 -2FUM 4.3 PKNB_MYCTU
18 PsiBlast_PDB 56.8130% -71 - C1 -2R0I - MARK2_RAT -
12 PsiBlast_PDB 56.6729% -72 - C1 -4CZU - CIPKN_ARATH -
17 PsiBlast_PDB 49.5230% -69 - C1 -3MVJ 3.7 KAPCA_HUMAN