@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Rv0684: (2016-04-24 )
MAQKDVLTDLSRVRNFGIMAHIDAGKTTTTERILYYTGINYKIGEVHDGAATMDWMEQEQERGITITSAATTTFWKDNQLNIIDTPGHVDFTVEVERNLRVLDGAVAVFDGKEGVEPQSEQVWRQADKYDVPRICFVNKMDKIGADFYFSVRTMGERLGANAVPIQLPVGAEADFEGVVDLVEMNAKVWRGETKLGETYDTVEIPADLAEQAEEYRTKLLEVVAESDEHLLEKYLGGEELTVDEIKGAIRKLTIASEIYPVLCGSAFKNKGVQPMLDAVVDYLPSPLDVPPAIGHAPAKEDEEVVRKATTDEPFAALAFKIATHPFFGKLTYIRVYSGTVESGSQVINATKGKKERLGKLFQMHSNKENPVDRASAGHIYAVIGLKDTTTGDTLSDPNQQIVLESMTFPDPVIEVAIEPKTKSDQEKLSLSIQKLAEEDPTFKVHLDSETGQTVIGGMGELHLDILVDRMRREFKVEANVGKPQVAYKETIKRLVQNVEYTHKKQTGGSGQFAKVIINLEPFTGEEGATYEFESKVTGGRIPREYIPSVDAGAQDAMQYGVLAGYPLVNLKVTLLDGAYHEVDSSEMAFKIAGSQVLKKAAALAQPVILEPIMAVEVTTPEDYMGDVIGDLNSRRGQIQAMEERAGARVVRAHVPLSEMFGYVGDLRSKTQGRANYSMVFDSYSEVPANVSKEIIAKATGE

Atome Classification :

(27 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

GDP_A_2(2BM1)
EFG_THETH
[Raw transfer]




GDP_C_3(2EFG)
EFG_THET8
[Raw transfer]




GDP_A_3(1FNM)
EFG_THETH
[Raw transfer]




GDP_A_3(4M1K)
?
[Raw transfer]




GDP_A_2(2BM0)
?
[Raw transfer]




GCP_A_2(2J7K)
EFG_THETH
[Raw transfer]




GDP_A_3(4MYU)
EFG_THETH
[Raw transfer]




GDP_A_3(4MYT)
EFG_THETH
[Raw transfer]




G4P_A_5(4ZCM)
TYPA_ECOLI
[Raw transfer]




GDP_A_5(4ZCL)
TYPA_ECOLI
[Raw transfer]




GNP_A_3(2YWF)
LEPA_AQUAE
[Raw transfer]




GDP_B_9(4ZCL)
TYPA_ECOLI
[Raw transfer]




G4P_B_9(4ZCM)
TYPA_ECOLI
[Raw transfer]




GCP_A_2(5A9W)
TYPA_ECOLI
[Raw transfer]




GDP_A_2(5A9X)
TYPA_ECOLI
[Raw transfer]




GCP_A_2(3J25)
TET1_ENTFL
[Raw transfer]




6 PsiBlast_PDB 94.5461% -76 - C3 -2J7K 7.3 EFG_THETH
13 PsiBlast_PDB 94.1261% -74 - C3 -1FNM 7.3 EFG_THETH
8 PsiBlast_PDB 93.7661% -77 - C3 -4M1K 6.3 ?
11 PsiBlast_PDB 93.5161% -75 - C3 -2BM1 7.6 EFG_THETH
3 PsiBlast_PDB 93.2561% -72 - C3 -2OM7 - ? -
12 PsiBlast_PDB 93.1960% -79 - C3 -2BM0 6.6 ?
94 Fugue 92.9660% -75 - C3 -4M1K - ? -
9 PsiBlast_PDB 91.4661% -74 - C3 -4MYU 6.2 EFG_THETH
10 PsiBlast_PDB 91.1561% -64 - C3 -3IZP - ? -
7 PsiBlast_PDB 91.1461% -68 - C3 -4MYT 5.4 EFG_THETH
2 PsiBlast_PDB 89.1059% -57 * C3 *3J0E - EFG_ECOLI -
21 PsiBlast_CBE 88.7861% -8 - C- -2XEX - EFG_STAAU -
1 PsiBlast_PDB 88.0561% -10 - C- -2XEX - EFG_STAAU -
67 HHSearch 86.7261% -9 - C- -2XEX - EFG_STAAU -
4 PsiBlast_PDB 84.8861% -72 - C3 -2EFG 7.2 EFG_THET8
93 Fugue 84.7559% -67 - C3 -1ELO - ? -
72 HHSearch 79.5134% -66 - C3 -2DY1 - ? -
17 PsiBlast_PDB 78.9133% -67 - C3 -2DY1 - ? -
16 PsiBlast_PDB 77.5833% -64 - C3 -1WDT - ? -
19 PsiBlast_PDB 61.0625% -38 - C3 -3J25 3.7 TET1_ENTFL
22 PsiBlast_CBE 28.5438% -16 - C3 -2YWF 6.0 LEPA_AQUAE
23 PsiBlast_CBE 22.4538% -7 - C3 -4ZCL 4.8 TYPA_ECOLI
24 PsiBlast_CBE 21.6538% -3 - C3 -4ZCL 5.1 TYPA_ECOLI
28 PsiBlast_CBE 20.4538% -6 - C3 -4ZCM 5.5 TYPA_ECOLI
27 PsiBlast_CBE 19.3338% 0 - C3 -4ZCM 5.3 TYPA_ECOLI
30 PsiBlast_CBE 19.0538% 3 - C3 -5A9W 3.5 TYPA_ECOLI
29 PsiBlast_CBE 18.6538% 15 - C3 -5A9X 3.2 TYPA_ECOLI