@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Rv0896: (2016-04-26 )
MADTDDTATLRYPGGEIDLQIVHATEGADGIALGPLLAKTGHTTFDVGFANTAAAKSSITYIDGDAGILRYRGYPIDQLAEKSTFIEVCYLLIYGELPDTDQLAQFTGRIQRHTMLHEDLKRFFDGFPRNAHPMPVLSSVVNALSAYYQDALDPMDNGQVELSTIRLLAKLPTIAAYAYKKSVGQPFLYPDNSLTLVENFLRLTFGFPAEPYQADPEVVRALDMLFILHADHEQNCSTSTVRLVGSSRANLFTSISGGINALWGPLHGGANQAVLEMLEGIRDSGDDVSEFVRKVKNREAGVKLMGFGHRVYKNYDPRARIVKEQADKILAKLGGDDSLLGIAKELEEAALTDDYFIERKLYPNVDFYTGLIYRALGFPTRMFTVLFALGRLPGWIAHWREMHDEGDSKIGRPRQIYTGYTERDYVTIDAR

Atome Classification :

(32 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

AMX_E_5(1CSH)
?
[Raw transfer]




COA_C_3(1A59)
PRPC_ABDS2
[Raw transfer]




COA_C_3(1A59)
PRPC_ABDS2
[Raw transfer]




COA_D_4(1AJ8)
CISY_PYRFU
[Raw transfer]




COA_C_3(1AJ8)
CISY_PYRFU
[Raw transfer]




GOL_D_4(1VGM)
?
[Raw transfer]




GOL_D_4(1VGM)
?
[Raw transfer]




GOL_A_4(1IOM)
?
[Raw transfer]




GOL_A_4(1IOM)
?
[Raw transfer]




CIT_E_5(1AJ8)
CISY_PYRFU
[Raw transfer]




CIT_E_5(1AJ8)
CISY_PYRFU
[Raw transfer]




CIT_E_5(1AJ8)
CISY_PYRFU
[Raw transfer]




CIT_F_6(1AJ8)
CISY_PYRFU
[Raw transfer]




FLC_A_3(2P2W)
?
[Raw transfer]




FLC_A_3(2P2W)
?
[Raw transfer]




26 PsiBlast_CBE 98.3252%-112 - C9 -2H12 - CISY_ACEAC -
22 PsiBlast_CBE 97.7152%-114 - C9 -2H12 - CISY_ACEAC -
23 PsiBlast_CBE 97.6952%-113 - C9 -2H12 - CISY_ACEAC -
25 PsiBlast_CBE 97.3452%-112 - C9 -2H12 - CISY_ACEAC -
1 PsiBlast_PDB 97.1452%-116 - C9 -2H12 - CISY_ACEAC -
78 HHSearch 96.4552%-116 - C9 -2H12 - CISY_ACEAC -
24 PsiBlast_CBE 95.9252%-114 - C9 -2H12 - CISY_ACEAC -
11 PsiBlast_PDB 95.0151%-114 - C9 -4E6Y - ? -
80 HHSearch 92.4352%-103 - C9 -4JAD - CISY_ECOLI -
8 PsiBlast_PDB 92.3052%-103 - C9 -1OWC - CISY_ECOLI -
7 PsiBlast_PDB 91.7052%-103 - C9 -1OWB - CISY_ECOLI -
32 PsiBlast_CBE 91.6352%-102 - C9 -1OWB - CISY_ECOLI -
30 PsiBlast_CBE 91.5353%-103 - C9 -4JAD - CISY_ECOLI -
31 PsiBlast_CBE 91.3652%-100 - C9 -1OWC - CISY_ECOLI -
5 PsiBlast_PDB 91.2353%-104 - C9 -4JAF - CISY_ECOLI -
3 PsiBlast_PDB 90.8353%-105 - C9 -4JAD - CISY_ECOLI -
35 PsiBlast_CBE 90.7846%-112 - C9 -3MSU - ? -
33 PsiBlast_CBE 90.3552%-100 - C9 -1NXG - CISY_ECOLI -
28 PsiBlast_CBE 90.1853%-100 - C9 -4JAF - CISY_ECOLI -
27 PsiBlast_CBE 90.0953%-101 - C9 -4JAG - CISY_ECOLI -
37 PsiBlast_CBE 81.1336%-103 - C9 -1AJ8 7.7 CISY_PYRFU
81 HHSearch 80.8536%-105 - C9 -1AJ8 3.0 CISY_PYRFU
98 Fugue 80.8036%-107 * C9 *1AJ8 3.0 CISY_PYRFU
88 HHSearch 80.7534%-106 - C9 -1VGM 2.4 ?
16 PsiBlast_PDB 80.7137%-110 - C9 -2P2W 3.8 ?
94 HHSearch 80.6136%-108 - C9 -1A59 7.3 PRPC_ABDS2
82 HHSearch 80.4835%-108 - C9 -1IOM 3.1 ?
85 HHSearch 80.3638%-109 - C9 -2P2W 3.8 ?
15 PsiBlast_PDB 80.1436%-101 - C9 -1AJ8 6.6 CISY_PYRFU
17 PsiBlast_PDB 79.7335%-100 - C9 -1VGM 2.4 ?
18 PsiBlast_PDB 78.8036%-100 - C9 -1A59 7.3 PRPC_ABDS2
20 PsiBlast_PDB 78.2836%-103 - C9 -1IOM 3.1 ?