@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Rv2535c: (2016-05-11 )
MTHSQRRDKLKAQIAASGLDAMLISDLINVRYLSGFSGSNGALLVFADERDAVLATDGRYRTQAASQAPDLEVAIERAVGRYLAGRAGEAGVGKLGFESHVVTVDGLDALAGALEGKNTELVRASGTVESLREVKDAGELALLRLACEAADAALTDLVARGGLRPGRTERQVSRELEALMLDHGADAVSFETIVAAGANSAIPHHRPTDAVLQVGDFVKIDFGALVAGYHSDMTRTFVLGKAADWQLEIYQLVAEAQQAGRQALLPGAELRGVDAAARQLIADAGYGEHFGHGLGHGVGLQIHEAPGIGVTSAGTLLAGSVVTVEPGVYLPGRGGVRIEDTLVVAGGTPKMPETAGQTPELLTRFPKELAIL

Atome Classification :

(32 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

1PE_A_5(4PV4)
?
[Raw transfer]



P6G_B_10(4PV4)
?
[Raw transfer]



PG4_A_3(1WLR)
AMPP_ECOLI
[Raw transfer]



P6G_A_6(3CTZ)
XPP1_HUMAN
[Raw transfer]



MRD_A_8(2BHB)
AMPP_ECOLI
[Raw transfer]



CHAIN_B_2(1N51)
AMPP_ECOLI
[Raw transfer]
-
IPA_A_7(1WL6)
AMPP_ECOLI
[Raw transfer]



XPE_A_6(1WL6)
AMPP_ECOLI
[Raw transfer]



LEU_A_3(2BH3)
AMPP_ECOLI
[Raw transfer]



CHAIN_B_2(2BHD)
AMPP_ECOLI
[Raw transfer]
-
LEU_A_3(1A16)
AMPP_ECOLI
[Raw transfer]



LEU_A_3(2BN7)
AMPP_ECOLI
[Raw transfer]



CHAIN_B_2(2BHA)
AMPP_ECOLI
[Raw transfer]
-
51 HHSearch 94.9942% -89 - C1 -3Q6D - ? -
21 PsiBlast_CBE 93.2239% -87 - C1 -3Q6D - ? -
1 PsiBlast_PDB 92.9339% -89 - C1 -3Q6D - ? -
23 PsiBlast_CBE 92.3439% -86 - C1 -3Q6D - ? -
22 PsiBlast_CBE 90.2439% -85 - C1 -3Q6D - ? -
53 HHSearch 88.8334% -85 - C1 -2ZSG - ? -
4 PsiBlast_PDB 88.7833% -81 - C1 -2ZSG - ? -
25 PsiBlast_CBE 87.7033% -85 - C1 -2ZSG - ? -
57 HHSearch 83.9335% -75 - C1 -1WY2 - PEPQ_PYRHO -
26 PsiBlast_CBE 82.9733% -73 - C1 -1WN1 - ? -
7 PsiBlast_PDB 82.9133% -74 - C1 -2HOW - ? -
24 PsiBlast_CBE 82.3234% -70 - C1 -1WY2 - PEPQ_PYRHO -
3 PsiBlast_PDB 82.0134% -67 - C1 -1WY2 - PEPQ_PYRHO -
44 Fugue 81.5834% -76 - C1 -1WN1 - ? -
54 HHSearch 81.4533% -75 - C1 -4FKC - ? -
43 Fugue 81.4133% -80 - C1 -1PV9 - PEPQ_PYRFU -
6 PsiBlast_PDB 80.9033% -73 - C1 -1WN1 - ? -
52 HHSearch 80.3234% -72 - C1 -4EGE - ? -
56 HHSearch 79.7633% -74 - C1 -1WN1 - ? -
9 PsiBlast_PDB 77.1333% -69 - C1 -4FKC - ? -
13 PsiBlast_PDB 61.3731% -65 - C1 -1N51 7.0 AMPP_ECOLI
15 PsiBlast_PDB 61.1931% -66 - C1 -1WLR 2.9 AMPP_ECOLI
19 PsiBlast_PDB 61.1731% -65 - C1 -2BHD 3.3 AMPP_ECOLI
30 PsiBlast_CBE 61.0831% -65 - C1 -2BH3 2.8 AMPP_ECOLI
29 PsiBlast_CBE 61.0631% -64 - C1 -2BN7 2.8 AMPP_ECOLI
14 PsiBlast_PDB 60.9931% -65 - C1 -1WL6 3.0 AMPP_ECOLI
17 PsiBlast_PDB 60.7331% -63 - C1 -2BHB 3.1 AMPP_ECOLI
16 PsiBlast_PDB 60.6531% -64 - C1 -2BHA 5.1 AMPP_ECOLI
20 PsiBlast_PDB 58.9831% -64 - C1 -1A16 2.7 AMPP_ECOLI
38 PsiBlast_CBE 56.8032% -61 - C1 -4PV4 2.4 ?
37 PsiBlast_CBE 55.8432% -61 - C1 -4PV4 2.6 ?
39 PsiBlast_CBE 42.6535% -72 - C1 -3CTZ 3.4 XPP1_HUMAN