@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Rv2580c: (2016-05-12 )
MTEFSSFSAPKGVPDYVPPDSAQFVAVRDGLLAAARQAGYSHIELPIFEDTALFARGVGESTDVVSKEMYTFADRGDRSVTLRPEGTAGVVRAVIEHGLDRGALPVKLCYAGPFFRYERPQAGRYRQLQQVGVEAIGVDDPALDAEVIAIADAGFRSLGLDGFRLEITSLGDESCRPQYRELLQEFLFGLDLDEDTRRRAGINPLRVLDDKRPELRAMTASAPVLLDHLSDVAKQHFDTVLAHLDALGVPYVINPRMVRGLDYYTKTAFEFVHDGLGAQSGIGGGGRYDGLMHQLGGQDLSGIGFGLGVDRTVLALRAEGKTAGDSARCDVFGVPLGEAAKLRLAVLAGRLRAAGVRVDLAYGDRGLKGAMRAAARSGARVALVAGDRDIEAGTVAVKDLTTGEQVSVSMDSVVAEVISRLAG

Atome Classification :

(26 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ATP_B_7(5E3I)
SYH_ACIBS
[Raw transfer]



ATP_A_4(5E3I)
SYH_ACIBS
[Raw transfer]



ATP_A_4(5E3I)
SYH_ACIBS
[Raw transfer]



AMP_A_3(4RDX)
SYH_THET2
[Raw transfer]



HIS_A_3(4E51)
SYH_BURTA
[Raw transfer]



HIS_A_3(4E51)
SYH_BURTA
[Raw transfer]



CHAIN_H_8(1HTT)
SYH_ECOLI
[Raw transfer]
-
HIS_B_4(4E51)
SYH_BURTA
[Raw transfer]



CHAIN_G_6(1HTT)
SYH_ECOLI
[Raw transfer]
-
CHAIN_F_4(1HTT)
SYH_ECOLI
[Raw transfer]
-
CHAIN_E_2(1HTT)
SYH_ECOLI
[Raw transfer]
-
CHAIN_E_2(1HTT)
SYH_ECOLI
[Raw transfer]
-
LMR_A_2(3RAC)
?
[Raw transfer]
7 PsiBlast_PDB 93.5441%-103 - C2 -4E51 3.1 SYH_BURTA
34 PsiBlast_CBE 93.4641%-113 - C2 -4E51 3.8 SYH_BURTA
43 HHSearch 91.9743% -95 - C2 -4E51 3.1 SYH_BURTA
42 HHSearch 90.9544%-106 - C2 -1QE0 - SYH_STAAU -
44 HHSearch 90.1942% -98 - C2 -1H4V - SYH_THET2 -
1 PsiBlast_PDB 89.3243%-105 - C2 -1QE0 - SYH_STAAU -
40 PsiBlast_CBE 89.1544% -99 - C2 -1ADJ - SYH_THET8 -
36 PsiBlast_CBE 88.8644% -98 - C2 -1ADY - SYH_THET8 -
38 PsiBlast_CBE 88.7344%-101 - C2 -1ADJ - SYH_THET8 -
10 PsiBlast_PDB 88.5844% -96 - C2 -1ADY - SYH_THET8 -
37 PsiBlast_CBE 88.4544% -97 - C2 -1ADY - SYH_THET8 -
9 PsiBlast_PDB 88.4244% -98 - C2 -1ADJ - SYH_THET8 -
39 PsiBlast_CBE 88.4144%-100 - C2 -1ADJ - SYH_THET8 -
35 PsiBlast_CBE 88.2044% -98 - C2 -1ADY - SYH_THET8 -
33 PsiBlast_CBE 87.6341%-104 - C2 -5E3I 4.6 SYH_ACIBS
8 PsiBlast_PDB 87.2544%-100 - C2 -4RDX 5.0 SYH_THET2
6 PsiBlast_PDB 86.5241%-102 - C2 -5E3I 5.1 SYH_ACIBS
11 PsiBlast_PDB 86.2144%-103 - C2 -1H4V - SYH_THET2 -
28 PsiBlast_CBE 85.9643% -97 - C2 -1KMM - SYH_ECOLI -
3 PsiBlast_PDB 85.8143% -96 - C2 -1KMM - SYH_ECOLI -
22 PsiBlast_CBE 85.2743% -95 - C2 -1HTT 3.4 SYH_ECOLI
47 HHSearch 84.8441%-102 * C2 *5E3I 5.1 SYH_ACIBS
2 PsiBlast_PDB 84.6843% -93 - C2 -1HTT 3.5 SYH_ECOLI
41 HHSearch 84.5844% -96 - C2 -1HTT 3.5 SYH_ECOLI
23 PsiBlast_CBE 82.4743% -99 - C2 -1HTT 3.2 SYH_ECOLI
21 PsiBlast_CBE 82.2343% -98 - C2 -1HTT 3.2 SYH_ECOLI