@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Rv2930: (2016-05-15 )
MPVTDRSVPSLLQERADQQPDSTAYTYIDYGSDPKGFADSLTWSQVYSRACIIAEELKLCGLPGDRVAVLAPQGLEYVLAFLGALQAGFIAVPLSTPQYGIHDDRVSAVLQDSKPVAILTTSSVVGDVTKYAASHDGQPAPVVVEVDLLDLDSPRQMPAFSRQHTGAAYLQYTSGSTRTPAGVIVSHTNVIANVTQSMYGYFGDPAKIPTGTVVSWLPLYHDMGLILGICAPLVARRRAMLMSPMSFLRRPARWMQLLATSGRCFSAAPNFAFELAVRRTSDQDMAGLDLRDVVGIVSGSERIHVATVRRFIERFAPYNLSPTAIRPSYGLAEATLYVAAPEAGAAPKTVRFDYEQLTAGQARPCGTDGSVGTELISYGSPDPSSVRIVNPETMVENPPGVVGEIWVHGDHVTMGYWQKPKQTAQVFDAKLVDPAPAAPEGPWLRTGDLGVISDGELFIMGRIKDLLIVDGRNHYPDDIEATIQEITGGRAAAIAVPDDITEQLVAIIEFKRRGSTAEEVMLKLRSVKREVTSAISKSHSLRVADLVLVSPGSIPITTSGKIRRSACVERYRSDGFKRLDVAV

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

1ZZ_A_2(3LNV)
?
[Raw transfer]




5SV_A_3(5EY9)
FAA32_MYCMM
[Raw transfer]




5SV_A_3(5EY9)
FAA32_MYCMM
[Raw transfer]




1ZZ_A_2(3KXW)
?
[Raw transfer]




1ZZ_A_2(3KXW)
?
[Raw transfer]




ATP_A_4(5D6J)
?
[Raw transfer]




ATP_A_4(5D6J)
?
[Raw transfer]




5SV_B_8(5EY9)
FAA32_MYCMM
[Raw transfer]




PBK_A_3(3PBK)
?
[Raw transfer]




42 Fugue 94.4839%-103 - C5 -5EY9 5.6 FAA32_MYCMM
1 PsiBlast_PDB 93.7757%-116 - C5 -3T5A - FAA28_MYCTU -
5 PsiBlast_PDB 92.3538%-100 - C5 -5ICR - ? -
23 PsiBlast_CBE 92.3238%-101 - C5 -5EY8 - ? -
24 PsiBlast_CBE 92.2138% -98 - C5 -5EY8 - ? -
54 HHSearch 92.0939%-101 - C5 -5D6J 6.4 ?
3 PsiBlast_PDB 91.8338% -98 - C5 -5EY8 - ? -
4 PsiBlast_PDB 91.7138%-101 - C5 -5D6J 6.4 ?
22 PsiBlast_CBE 91.5438%-101 - C5 -5EY8 - ? -
26 PsiBlast_CBE 91.5338%-101 - C5 -5EY8 - ? -
25 PsiBlast_CBE 91.0838%-101 - C5 -5EY8 - ? -
21 PsiBlast_CBE 90.4139%-102 - C5 -5EY9 8.0 FAA32_MYCMM
2 PsiBlast_PDB 90.1439%-101 - C5 -5EY9 7.4 FAA32_MYCMM
61 HHSearch 89.0732% -99 - C5 -3KXW 3.6 ?
8 PsiBlast_PDB 86.4332%-106 - C5 -3LNV 5.3 ?
7 PsiBlast_PDB 86.1832%-103 - C5 -3KXW 3.6 ?
6 PsiBlast_PDB 81.4339%-100 - C5 -5D6N - ? -
9 PsiBlast_PDB 78.5532% -84 - C5 -3PBK 6.5 ?
10 PsiBlast_PDB 75.8625%-100 - C5 -4R0M - ? -
11 PsiBlast_PDB 71.5825%-106 - C5 -4FUQ - ? -