@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Rv3340: (2016-05-19 )
MSADSNSTDADPTAHWSFETKQIHAGQHPDPTTNARALPIYATTSYTFDDTAHAAALFGLEIPGNIYTRIGNPTTDVVEQRIAALEGGVAALFLSSGQAAETFAILNLAGAGDHIVSSPRLYGGTYNLFHYSLAKLGIEVSFVDDPDDLDTWQAAVRPNTKAFFAETISNPQIDLLDTPAVSEVAHRNGVPLIVDNTIATPYLIQPLAQGADIVVHSATKYLGGHGAAIAGVIVDGGNFDWTQGRFPGFTTPDPSYHGVVFAELGPPAFALKARVQLLRDYGSAASPFNAFLVAQGLETLSLRIERHVANAQRVAEFLAARDDVLSVNYAGLPSSPWHERAKRLAPKGTGAVLSFELAGGIEAGKAFVNALKLHSHVANIGDVRSLVIHPASTTHAQLSPAEQLATGVSPGLVRLAVGIEGIDDILADLELGFAAARRFSADPQSVAAF

Atome Classification :

(29 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

PPJ_A_3(1E5E)
?
[Raw transfer]



PPJ_A_3(1E5E)
?
[Raw transfer]



PPJ_B_7(1E5E)
?
[Raw transfer]



PLP_B_8(1E5F)
?
[Raw transfer]



PZP_A_2(3MKJ)
?
[Raw transfer]



PLP_A_3(2CTZ)
?
[Raw transfer]



PLP_A_3(2CTZ)
?
[Raw transfer]



PLP_A_3(1E5F)
?
[Raw transfer]



PLP_B_5(5DX5)
?
[Raw transfer]



PLP_B_4(2CTZ)
?
[Raw transfer]



PLP_A_3(5DX5)
?
[Raw transfer]



PLP_A_3(5DX5)
?
[Raw transfer]



NLE_A_2(3JWB)
?
[Raw transfer]



PLP_A_11(1IBJ)
METC_ARATH
[Raw transfer]



MPJ_A_2(3JWA)
?
[Raw transfer]



ECX_A_2(3JW9)
?
[Raw transfer]
22 PsiBlast_CBE 93.9190%-110 - C1 -4KAM - ? -
23 PsiBlast_CBE 92.6790%-108 - C1 -4KAM - ? -
101 HHSearch 91.0891%-109 - C1 -4KAM - ? -
1 PsiBlast_PDB 90.8490%-109 - C1 -4KAM - ? -
21 PsiBlast_CBE 89.8590%-112 - C1 -4KAM - ? -
2 PsiBlast_PDB 82.5353% -96 - C1 -2CTZ 4.5 ?
102 HHSearch 82.0853% -95 - C1 -2CTZ 4.5 ?
24 PsiBlast_CBE 82.0753% -95 - C1 -2CTZ 4.5 ?
4 PsiBlast_PDB 77.5842% -93 - C1 -4OMA - ? -
104 HHSearch 76.6841% -98 - C1 -4OC9 - ? -
26 PsiBlast_CBE 76.6140% -98 - C1 -4OC9 - ? -
27 PsiBlast_CBE 76.4640% -98 - C1 -4OC9 - ? -
3 PsiBlast_PDB 76.2740% -98 - C1 -4OC9 - ? -
29 PsiBlast_CBE 76.2640% -99 - C1 -4OC9 - ? -
114 HHSearch 76.2044% -92 - C1 -2RFV - ? -
7 PsiBlast_PDB 75.6942% -93 - C1 -3JWA 3.3 ?
9 PsiBlast_PDB 75.6542% -94 - C1 -3JW9 3.6 ?
28 PsiBlast_CBE 75.4840% -97 - C1 -4OC9 - ? -
33 PsiBlast_CBE 75.4639% -92 - C1 -5DX5 3.2 ?
8 PsiBlast_PDB 75.2442% -93 - C1 -3JWB 2.9 ?
108 HHSearch 75.1341% -88 - C1 -5DX5 3.9 ?
20 PsiBlast_PDB 73.8039% -94 - C1 -5DX5 3.9 ?
6 PsiBlast_PDB 72.2942% -94 - C1 -3MKJ 4.7 ?
82 PsiBlast_CBE 68.9735% -86 - C1 -1E5F 3.6 ?
84 PsiBlast_CBE 68.6635% -87 - C1 -1E5E 4.7 ?
83 PsiBlast_CBE 68.3335% -87 - C1 -1E5F 3.6 ?
85 PsiBlast_CBE 68.3235% -85 - C1 -1E5E 5.1 ?
111 HHSearch 65.7937% -84 - C1 -1E5E 5.1 ?
112 HHSearch 64.7335% -85 - C1 -1IBJ 3.7 METC_ARATH