@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Rv3907c: (2016-05-24 )
MPEAVQEADLLTAAAVALNRHAALLRELGSVFAAAGHELYLVGGSVRDALLGRLSPDLDFTTDARPERVQEIVRPWADAVWDTGIEFGTVGVGKSDHRMEITTFRADSYDRVSRHPEVRFGDCLEGDLVRRDFTTNAMAVRVTATGPGEFLDPLGGLAALRAKVLDTPAAPSGSFGDDPLRMLRAARFVSQLGFAVAPRVRAAIEEMAPQLARISAERVAAELDKLLVGEDPAAGIDLMVQSGMGAVVLPEIGGMRMAIDEHHQHKDVYQHSLTVLRQAIALEDDGPDLVLRWAALLHDIGKPATRRHEPDGGVSFHHHEVVGAKMVRKRMRALKYSKQMIDDISQLVYLHLRFHGYGDGKWTDSAVRRYVTDAGALLPRLHKLVRADCTTRNKRRAARLQASYDRLEERIAELAAQEDLDRVRPDLDGNQIMAVLDIPAGPQVGEAWRYLKELRLERGPLSTEEATTELLSWWKSRGNR

Atome Classification :

(31 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ATP_A_7(1MIW)
CCA_GEOSE
[Raw transfer]



ATP_A_7(1MIW)
CCA_GEOSE
[Raw transfer]



ATP_B_5(4WC0)
?
[Raw transfer]



APC_E_5(1VFG)
?
[Raw transfer]



CTP_A_7(1MIY)
CCA_GEOSE
[Raw transfer]



APC_F_6(1VFG)
?
[Raw transfer]



CTP_B_8(1MIY)
CCA_GEOSE
[Raw transfer]



ATP_A_3(4WC0)
?
[Raw transfer]



CTP_A_3(4WC5)
?
[Raw transfer]



ATP_A_3(4WC6)
?
[Raw transfer]



CTP_B_4(4WC1)
?
[Raw transfer]



CTP_A_3(4WC7)
?
[Raw transfer]



CTP_A_3(4WC1)
?
[Raw transfer]



ATP_A_3(4WC4)
?
[Raw transfer]



APC_A_3(4WC2)
?
[Raw transfer]



GOL_A_4(3AQL)
?
[Raw transfer]
31 HHSearch 87.8331% -85 - C3 -1MIW 5.3 CCA_GEOSE
27 HHSearch 84.8526% -93 - C3 -3WFO - ? -
4 PsiBlast_PDB 81.4126% -84 - C3 -3WFO - ? -
59 Fugue 81.2026% -65 - C3 -4X4W - TRNT1_HUMAN -
6 PsiBlast_PDB 80.6926% -82 - C3 -3WFP - ? -
29 HHSearch 80.1725% -85 - C3 -4X4W - TRNT1_HUMAN -
33 HHSearch 79.1326% -91 - C3 -3WFP - ? -
57 Fugue 77.6623% -81 - C3 -3AQL - ? -
28 HHSearch 76.0122% -72 - C3 -3H38 - ? -
56 Fugue 72.8525% -70 - C3 -1OU5 - TRNT1_HUMAN -
21 PsiBlast_CBE 71.0237% -69 - C3 -1MIY 4.6 CCA_GEOSE
35 HHSearch 70.9925% -90 - C3 -3AQL 1.9 ?
3 PsiBlast_PDB 70.4737% -71 - C3 -1MIW 5.3 CCA_GEOSE
2 PsiBlast_PDB 70.2737% -72 - C3 -1MIV - CCA_GEOSE -
1 PsiBlast_PDB 69.8237% -71 - C3 -1MIY 3.6 CCA_GEOSE
30 HHSearch 69.1823% -81 - C3 -4WBY - ? -
20 PsiBlast_PDB 67.7930% -83 - C3 -4X4W - TRNT1_HUMAN -
55 Fugue 65.2921% -71 - C3 -1VFG - ? -
25 PsiBlast_CBE 59.3631% -81 - C3 -3AQM - ? -
26 PsiBlast_CBE 59.3331% -83 - C3 -3AQM - ? -
12 PsiBlast_PDB 55.7336% -66 - C3 -4WC2 4.4 ?
8 PsiBlast_PDB 55.3236% -75 - C3 -1VFG 4.7 ?
23 PsiBlast_CBE 55.1936% -69 - C3 -4WC0 4.8 ?
24 PsiBlast_CBE 55.0136% -73 - C3 -1VFG 4.7 ?
11 PsiBlast_PDB 55.0136% -65 - C3 -4WC1 3.8 ?
16 PsiBlast_PDB 54.8636% -72 - C3 -4WC6 4.6 ?
22 PsiBlast_CBE 54.7236% -78 - C3 -4WC1 3.9 ?
15 PsiBlast_PDB 54.6136% -70 - C3 -4WC5 4.8 ?
10 PsiBlast_PDB 54.4236% -70 - C3 -4WC0 4.6 ?
17 PsiBlast_PDB 54.2536% -72 - C3 -4WC7 5.0 ?
14 PsiBlast_PDB 54.1836% -72 - C3 -4WC4 4.5 ?