@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Rv3918c: (2016-05-24 )
MSAPWGPVAAGPSALVRSGQASTIEPFQREMTPPTPTPEAAHNPTMNVSRETSTEFDTPIGAAAERAMRVLHTTHEPLQRPGRRRVLTIANQKGGVGKTTTAVNIAAALAVQGLKTLVIDLDPQGNASTALGITDRQSGTPSSYEMLIGEVSLHTALRRSPHSERLFCIPATIDLAGAEIELVSMVARENRLRTALAALDNFDFDYVFVDCPPSLGLLTINALVAAPEVMIPIQCEYYALEGVSQLMRNIEMVKAHLNPQLEVTTVILTMYDGRTKLADQVADEVRQYFGSKVLRTVIPRSVKVSEAPGYSMTIIDYDPGSRGAMSYLDASRELAERDRPPSAKGRP

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ATP_A_5(2BEK)
SOJ_THET2
[Raw transfer]




ATP_B_7(2BEK)
SOJ_THET2
[Raw transfer]




ATP_D_11(2BEK)
SOJ_THET2
[Raw transfer]




ATP_C_9(2BEK)
SOJ_THET2
[Raw transfer]




ATP_D_11(2BEK)
SOJ_THET2
[Raw transfer]




ADP_B_4(4RZ3)
?
[Raw transfer]




ADP_A_2(2BEJ)
SOJ_THET2
[Raw transfer]




1 PsiBlast_PDB 96.7847%-103 - C1 -2BEJ 7.2 SOJ_THET2
22 PsiBlast_CBE 96.2546%-106 - C1 -2BEK 3.3 SOJ_THET2
2 PsiBlast_PDB 95.4146%-104 - C1 -2BEK 8.2 SOJ_THET2
21 PsiBlast_CBE 94.9046%-106 - C1 -2BEK 8.4 SOJ_THET2
23 PsiBlast_CBE 94.7746%-104 - C1 -2BEK 8.1 SOJ_THET2
79 Fugue 81.8223% -85 - C1 -3Q9L - MIND_ECOLI -
9 PsiBlast_PDB 81.2024%-104 - C1 -3Q9L - MIND_ECOLI -
10 PsiBlast_PDB 81.1824%-104 - C1 -3R9I - MIND_ECOLI -
11 PsiBlast_PDB 81.0624%-106 - C1 -3R9J - MIND_ECOLI -
59 HHSearch 80.1223% -90 - C1 -3Q9L - MIND_ECOLI -
4 PsiBlast_PDB 78.9824% -89 - C1 -1G3R - ? -
54 HHSearch 78.3825% -86 - C1 -2OZE - ? -
74 Fugue 77.5623% -77 - C1 -2OZE - ? -
3 PsiBlast_PDB 77.1024% -86 * C1 *1G3Q - ? -
56 HHSearch 76.6424% -90 - C1 -1G3Q - ? -
58 HHSearch 76.2823%-101 - C1 -1HYQ - ? -
65 HHSearch 76.1422% -98 - C1 -4V03 - ? -
7 PsiBlast_PDB 74.2224% -86 - C1 -1ION - ? -
51 HHSearch 71.9320% -81 - C1 -3EZ2 - PARA_ECOLX -
57 HHSearch 71.7520%-103 - C1 -3EA0 - ? -