@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PA0244: (2015-12-27 )
MSAPRSVLAGLIGAGIQASRTPALHEREGDAQGIRYLYRLIDLDPLGKSADDLEFLLAAASDLGFTGLNVTFPCKQAIIPLLDDLSAEARGIGAVNTVVLRDGRRIGHNTDCLGFAEGFRRGLADAPRQRVVQMGAGGAGAAVAHALLAEGVERLVLFDVDPARAQALADNLNQHFGAPRALAGSDLAGALGDAQGLVNTTPVGMAKLPGMPVPAELLRADLWVAEVIYFPLETELLRQARALGCRTLDGGTMAVFQAVKAFELFSGVTADAARMQAHFASLGD

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

SKM_A_2(3PHH)
AROE_HELPY
[Raw transfer]



DHK_A_5(2O7S)
DHQSD_ARATH
[Raw transfer]



NAD_A_2(3JYQ)
AROE_CORGL
[Raw transfer]



NAD_A_2(3JYP)
AROE_CORGL
[Raw transfer]



GOL_A_2(2NLO)
AROE_CORGL
[Raw transfer]



NAD_A_2(3JYO)
AROE_CORGL
[Raw transfer]



SKM_A_6(3TNL)
AROE_LISMO
[Raw transfer]



NAD_A_2(3JYO)
AROE_CORGL
[Raw transfer]



NAD_A_2(3JYO)
AROE_CORGL
[Raw transfer]



ATR_A_5(2HK9)
AROE_AQUAE
[Raw transfer]



DTV_A_20(1NYT)
AROE_ECOLI
[Raw transfer]
96 Fugue 92.9350%-111 - C3 -3JYO 8.2 AROE_CORGL
4 PsiBlast_PDB 92.0751%-109 - C3 -3JYQ 7.5 AROE_CORGL
108 HHSearch 91.9350%-109 - C3 -3JYO 8.2 AROE_CORGL
3 PsiBlast_PDB 91.8151%-108 - C3 -3JYP 7.7 AROE_CORGL
1 PsiBlast_PDB 91.4951%-108 - C3 -2NLO 3.0 AROE_CORGL
2 PsiBlast_PDB 91.4151%-110 - C3 -3JYO 7.8 AROE_CORGL
107 HHSearch 80.6230%-102 * C3 *3TNL 3.5 AROE_LISMO
21 PsiBlast_CBE 79.7732%-111 - C3 -1NVT - AROE_METJA -
112 HHSearch 79.5332%-108 - C3 -1NVT - AROE_METJA -
5 PsiBlast_PDB 79.1232%-111 - C3 -1NVT - AROE_METJA -
121 HHSearch 78.6330%-106 - C3 -2HK9 4.4 AROE_AQUAE
115 HHSearch 78.2332%-100 - C3 -2O7S 3.5 DHQSD_ARATH
13 PsiBlast_PDB 77.3930%-105 - C3 -3TNL - AROE_LISMO -
26 PsiBlast_CBE 77.2332%-100 - C3 -3T4E - YDIB_SALTY -
15 PsiBlast_PDB 77.1132% -98 - C3 -3T4E - YDIB_SALTY -
12 PsiBlast_PDB 77.0230%-107 - C3 -3TOZ - AROE_LISMO -
122 HHSearch 77.0132%-105 - C3 -2EGG - AROE_GEOKA -
22 PsiBlast_CBE 77.0131%-104 - C3 -2HK9 - AROE_AQUAE -
106 HHSearch 76.9929% -98 - C3 -3T4E - YDIB_SALTY -
114 HHSearch 76.4827%-101 - C3 -3DON - AROE_STAEQ -