@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PA0399: (2016-01-03 )
MTSDSRPAVLDLIGNTPLVRVTRFDTGPCTLYLKLESQNPGGSIKDRIGVAMIEAAERDGRLRPGGTIVEATAGNTGLGLALVGRAKGYRVVLVVPDKMSTEKVLHLRAMGAEVHITRSDVGKGHPEYYQDVAARLAQDIPGAFFADQFNNPANPLAHECGTGPELWAQTGHDLDAIVVGVGSSGTLTGLTRFFQKVQPELEMVLADPEGSIMAEYSRSGTLGTPGSWAVEGIGEDFVPAIADLSSVRHAYSISDEESFAMARELLRVEGIPGGSSTGTLLAAALRFCREQKEPKRVVSFVCDTGTRYLSKIYNDQWMTDQGLLQRKHYGDLRDIIARRFEEGRVISVGPDDTLLTAFQRMRLADVSQLPVLDDGKLVGVIDESDILLGVHADAPRFRDAVSSAMNAAPETLAPGASLAQLQAVLDRGLVAIVADASGFHGLITRFDLLNHLRRKLA

Atome Classification :

(39 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

PDA_A_2(2Q3D)
CYSK_MYCTU
[Raw transfer]



4AT_A_4(2EFY)
?
[Raw transfer]



PLP_D_4(1D6S)
CYSK_SALTY
[Raw transfer]



AWH_A_3(3ZEI)
CYSK_MYCTU
[Raw transfer]



PLP_E_5(1D6S)
CYSK_SALTY
[Raw transfer]



PLP_B_5(4L0D)
CBS_HUMAN
[Raw transfer]



4MV_A_3(2ECO)
?
[Raw transfer]



PLP_A_3(4L0D)
CBS_HUMAN
[Raw transfer]



PLP_B_7(4LMA)
?
[Raw transfer]



PLP_B_4(1OAS)
CYSK_SALTY
[Raw transfer]



PLP_D_16(1FCJ)
CYSK_SALTY
[Raw transfer]



PLP_A_3(1OAS)
CYSK_SALTY
[Raw transfer]



PLP_A_13(1FCJ)
CYSK_SALTY
[Raw transfer]



PLP_A_4(4LMB)
?
[Raw transfer]



PLP_A_5(4COO)
CBS_HUMAN
[Raw transfer]



PLP_B_18(4COO)
CBS_HUMAN
[Raw transfer]



PLP_B_15(1FCJ)
CYSK_SALTY
[Raw transfer]



PLP_C_14(1FCJ)
CYSK_SALTY
[Raw transfer]



PLP_B_7(4PCU)
CBS_HUMAN
[Raw transfer]



PLP_A_4(4PCU)
CBS_HUMAN
[Raw transfer]



3HL_A_3(2ECQ)
?
[Raw transfer]



PLP_D_11(2BHS)
CYSM_ECOLI
[Raw transfer]



PLP_A_7(2BHS)
CYSM_ECOLI
[Raw transfer]



PLP_C_9(2BHS)
CYSM_ECOLI
[Raw transfer]



PLP_B_8(2BHS)
CYSM_ECOLI
[Raw transfer]



CYS_A_3(4LMB)
?
[Raw transfer]
23 PsiBlast_CBE 95.6535% -84 - C2 -4COO 4.7 CBS_HUMAN
1 PsiBlast_PDB 95.5435% -84 - C2 -4L0D 3.5 CBS_HUMAN
22 PsiBlast_CBE 94.8635% -86 - C2 -4L0D 5.0 CBS_HUMAN
2 PsiBlast_PDB 94.6235% -84 - C2 -4COO 4.4 CBS_HUMAN
26 PsiBlast_CBE 94.2935% -83 - C2 -4L3V - CBS_HUMAN -
3 PsiBlast_PDB 94.0535% -81 - C2 -4L28 - CBS_HUMAN -
24 PsiBlast_CBE 94.0035% -84 - C2 -4PCU 3.0 CBS_HUMAN
5 PsiBlast_PDB 93.6435% -81 - C2 -4L3V - CBS_HUMAN -
25 PsiBlast_CBE 93.5935% -81 - C2 -4L3V - CBS_HUMAN -
21 PsiBlast_CBE 93.2235% -83 - C2 -4L27 - CBS_HUMAN -
4 PsiBlast_PDB 92.0035% -81 - C2 -4PCU 3.7 CBS_HUMAN
101 HHSearch 91.6934% -74 - C2 -3PC3 - ? -
121 Fugue 90.6933% -72 - C2 -3PC3 - ? -
10 PsiBlast_PDB 87.7135% -73 - C2 -3PC3 - ? -
9 PsiBlast_PDB 87.6635% -74 - C2 -3PC2 - ? -
11 PsiBlast_PDB 86.6335% -73 - C2 -3PC4 - ? -
8 PsiBlast_PDB 83.6041% -87 - C2 -4OFX - ? -
33 PsiBlast_CBE 83.0642% -73 - C2 -1JBQ - CBS_HUMAN -
32 PsiBlast_CBE 82.6142% -71 - C2 -1JBQ - CBS_HUMAN -
7 PsiBlast_PDB 82.4142% -73 - C2 -1JBQ - CBS_HUMAN -
49 PsiBlast_CBE 78.3338% -72 - C2 -1OAS 3.3 CYSK_SALTY
19 PsiBlast_PDB 77.9138% -72 - C2 -1OAS 3.1 CYSK_SALTY
63 PsiBlast_CBE 76.9439% -81 - C2 -2ECQ 3.1 ?
13 PsiBlast_PDB 76.8539% -81 - C2 -2BHS 2.0 CYSM_ECOLI
41 PsiBlast_CBE 76.8139% -77 - C2 -2BHS 2.8 CYSM_ECOLI
64 PsiBlast_CBE 76.2439% -82 - C2 -2ECO 2.6 ?
40 PsiBlast_CBE 76.1439% -78 - C2 -2BHS 1.9 CYSM_ECOLI
51 PsiBlast_CBE 76.0938% -69 - C2 -1FCJ 2.5 CYSK_SALTY
39 PsiBlast_CBE 75.9939% -80 - C2 -2BHS 2.4 CYSM_ECOLI
52 PsiBlast_CBE 75.9638% -69 - C2 -1FCJ 3.5 CYSK_SALTY
50 PsiBlast_CBE 75.9338% -71 - C2 -1FCJ 3.3 CYSK_SALTY
56 PsiBlast_CBE 75.7638% -61 - C2 -1D6S 4.1 CYSK_SALTY
20 PsiBlast_PDB 75.2038% -68 - C2 -1FCJ 3.0 CYSK_SALTY
57 PsiBlast_CBE 75.1538% -60 - C2 -1D6S 4.3 CYSK_SALTY
54 PsiBlast_CBE 75.1338% -64 - C2 -4LMA 4.3 ?
60 PsiBlast_CBE 75.0239% -61 - C2 -4LMB 3.9 ?
66 PsiBlast_CBE 74.9539% -69 - C2 -3ZEI 6.4 CYSK_MYCTU
62 PsiBlast_CBE 74.8639% -81 - C2 -2EFY 2.7 ?
67 PsiBlast_CBE 73.0539% -59 - C2 -2Q3D 7.7 CYSK_MYCTU