@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PA0668: (2016-01-14 )
MKSVEEQLALIQRGADEILVEAELVAKLKRGQPLRIKAGFDPTAPDLHLGHTVLINKLRQFQDLGHQVIFLIGDFTGMIGDPSGKSVTRPPLTREQVLENAETYKSQVFKILDPAKTEVAFNSTWMDQLTPADFIRLASQYTVARMLERDDFSKRYASNQPIAIHEFLYPLVQGYDSVALKADVELGGTDQKFNLLMGRELQRAYGQEAQVILTMPLLEGLDGVKKMSKSLGNYIGIQEAPGVMYSKLVSIPDTLMWRYFELLSFRSLDEIDSFRKDVEAGANPRDIKIKLAEEIVARFHGEEAAASAHKSAGNRLKEGELPEDLPEIELSSPEDMPVASVLNKAGLVKNAAAARDLLGAGSVKVDGQVVDRTFMLALGETRVFQAGKKAFARITLKAE

Atome Classification :

(24 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

YSA_H_8(1VBM)
SYY_ECOLI
[Raw transfer]



YSA_C_3(1VBN)
SYY_ECOLI
[Raw transfer]



YSA_D_4(1VBN)
SYY_ECOLI
[Raw transfer]



YSA_A_3(2PID)
SYYM_HUMAN
[Raw transfer]



AZY_A_2(2YXN)
SYY_ECOLI
[Raw transfer]



AZY_A_2(2YXN)
SYY_ECOLI
[Raw transfer]



TYA_C_3(3TS1)
SYY_GEOSE
[Raw transfer]



YSA_G_7(1VBM)
SYY_ECOLI
[Raw transfer]



TYR_C_3(1WQ4)
SYY_ECOLI
[Raw transfer]



IYR_C_3(1WQ3)
SYY_ECOLI
[Raw transfer]



TYR_E_5(1X8X)
SYY_ECOLI
[Raw transfer]



TYR_S_3(1TYD)
SYY_GEOSE
[Raw transfer]



TYR_S_3(1TYA)
SYY_GEOSE
[Raw transfer]



TYR_S_3(1TYB)
SYY_GEOSE
[Raw transfer]



TYB_A_8(1H3F)
SYY_THET2
[Raw transfer]



TYB_A_8(1H3F)
SYY_THET2
[Raw transfer]



TYB_A_8(1H3F)
SYY_THET2
[Raw transfer]



TYR_C_3(4TS1)
SYY_GEOSE
[Raw transfer]



TYR_D_4(4TS1)
SYY_GEOSE
[Raw transfer]



TYB_B_9(1H3F)
SYY_THET2
[Raw transfer]



ATP_A_5(1H3E)
SYY_THET2
[Raw transfer]
1 PsiBlast_PDB 95.6947% -97 - C1 -1H3F 2.3 SYY_THET2
21 PsiBlast_CBE 95.1247%-101 - C1 -1H3F 3.5 SYY_THET2
45 Fugue 92.5247% -90 - C1 -1H3F 2.3 SYY_THET2
26 HHSearch 91.4549% -91 - C1 -1H3F 2.3 SYY_THET2
2 PsiBlast_PDB 90.9647% -83 - C1 -1H3E 5.0 SYY_THET2
27 HHSearch 71.7631% -78 - C1 -2JAN - SYY_MYCTU -
9 PsiBlast_PDB 67.3731% -74 - C1 -2JAN - SYY_MYCTU -
8 PsiBlast_PDB 64.3432% -71 - C1 -1VBM 7.6 SYY_ECOLI
22 PsiBlast_CBE 62.8032% -73 - C1 -1VBM 7.9 SYY_ECOLI
23 PsiBlast_CBE 62.5632% -72 - C1 -1VBN 6.8 SYY_ECOLI
13 PsiBlast_PDB 62.4432% -75 - C1 -1VBN 7.5 SYY_ECOLI
12 PsiBlast_PDB 62.4432% -73 - C1 -2YXN 2.9 SYY_ECOLI
11 PsiBlast_PDB 62.2032% -71 - C1 -1WQ3 3.6 SYY_ECOLI
19 PsiBlast_PDB 61.9232% -69 - C1 -1TYC - SYY_GEOSE -
17 PsiBlast_PDB 61.7432% -68 - C1 -1TYA 2.5 SYY_GEOSE
18 PsiBlast_PDB 61.6332% -69 - C1 -1TYD 2.7 SYY_GEOSE
7 PsiBlast_PDB 61.5432% -72 - C1 -1X8X 3.1 SYY_ECOLI
20 PsiBlast_PDB 61.4732% -67 - C1 -1TYB 2.4 SYY_GEOSE
24 PsiBlast_CBE 61.3332% -66 - C1 -4TS1 2.5 SYY_GEOSE
6 PsiBlast_PDB 61.2929% -67 - C1 -1JIL - SYY_STAAE -
10 PsiBlast_PDB 60.9832% -74 - C1 -1WQ4 2.8 SYY_ECOLI
30 HHSearch 60.3331% -57 - C1 -2YXN 2.9 SYY_ECOLI
16 PsiBlast_PDB 60.1232% -68 - C1 -4TS1 2.5 SYY_GEOSE
29 HHSearch 60.0630% -60 - C1 -2PID 7.0 SYYM_HUMAN