@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PA0956: (2016-01-25 )
MRTSQYLLSTLKETPADAVVISHQLLLRAGMIRRLASGLYTWLPMGLRVLRKVETIVREEMNAAGALEVLMPAVQPAELWQESGRWEQYGPELLRLKDRHEREFCVGPTHEEVITDLARNELNSYKQLPINFYQIQTKFRDEIRPRFGLMRGREFIMKDAYSFHLSQDSLQQTYDGMYQAYSKIFSRLGLDFRPVQADNGSIGGSGSHEFHVLANSGEDDIVFSDSSDYAANIEKAEAVPRESARGSATEDMRLVDTPNTKTIAALVDGFQLPIEKTIKTLVVHGAEEGTLVALIVRGDHELNEIKAANQPLVASPLVFASEAEIRAAIGAGPGSLGPVNLPIACIVDRSVALMSDFAAGANIEDKHYFGVNWERDLPLPEVADLRNVVEGDPSPDGKGTLVIKRGIEVGHIFQLGTKYSEAMKLSVLSEQGKPVNLIMGCYGIGVSRVVAAAIEQNHDERGILWPSALAPFQIALVPLKYETESVKQATDKLYAELTAAGFEVLLDDRDKKTSPGVKFADMELIGIPHRIVISDRGLSEGVLEYKGRRDSESQNLPIGELMSFITEKLSR

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

P5A_B_25(2J3L)
SYP_ENTFA
[Raw transfer]



ATP_A_3(2J3M)
SYP_ENTFA
[Raw transfer]



P5A_A_24(2J3L)
SYP_ENTFA
[Raw transfer]



P5A_A_24(2J3L)
SYP_ENTFA
[Raw transfer]



P5A_A_24(2J3L)
SYP_ENTFA
[Raw transfer]



ATP_B_7(2J3M)
SYP_ENTFA
[Raw transfer]
40 HHSearch 96.6748% -91 - C1 -2J3L 9.2 SYP_ENTFA
61 Fugue 96.3047% -91 - C1 -2J3L 9.2 SYP_ENTFA
1 PsiBlast_PDB 95.9947% -91 - C1 -2J3L 9.2 SYP_ENTFA
22 PsiBlast_CBE 95.7747% -89 - C1 -2J3L 9.3 SYP_ENTFA
21 PsiBlast_CBE 95.2847% -89 - C1 -2J3M 8.8 SYP_ENTFA
2 PsiBlast_PDB 94.7747% -88 - C1 -2J3M 8.0 SYP_ENTFA
41 HHSearch 81.7047% -89 - C1 -2I4L - SYP_RHOPA -
42 HHSearch 68.6425% -83 * C1 *1NJ1 - SYP_METTH -
63 Fugue 68.6023% -80 - C1 -1HC7 - SYP_THET8 -
44 HHSearch 66.1925% -78 - C1 -3IAL - ? -
45 HHSearch 65.3023% -83 - C1 -1HC7 - SYP_THET8 -
43 HHSearch 65.2725% -74 - C1 -1NJ8 - SYP_METJA -
68 Fugue 65.0524% -74 - C1 -3IAL - ? -
51 HHSearch 65.0321% -81 - C1 -1EVL - SYT_ECOLI -
46 HHSearch 64.3022% -80 - C1 -1QF6 - SYT_ECOLI -
47 HHSearch 60.9719% -64 - C1 -1NYR - SYT_STAAW -
49 HHSearch 60.7019% -80 - C1 -3UH0 - SYTM_YEAST -
48 HHSearch 59.6017% -59 - C1 -3A32 - SYT1_AERPE -
70 Fugue 59.1820% -40 - C1 -4QEI - SYG_HUMAN -
50 HHSearch 58.6820% -50 - C1 -1ATI - SYG_THET8 -