@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PA2188: (2016-02-05 )
MRALTFHGSHDVRIDRVAEPRLQEPDDLLLRVTATAICGSDLHLYRGKIPMVEQGDILGHEFMGVVEEVGSAVTAVRPGDRVVVPFVIACGECFFCRLNLHAACETTNPGRGAILNKKQIPPGAALYGYSHLYGGVPGGQAEYVRVPKANSGPFVIPDVMEDERVLFLSDILSTGYQAVRNAGVRQGSSVAIYGAGPVGLMAAACARMLGAERIFIVDHHPYRLDFAARTYGAIPIDFDQEDDPAAAIIERTDGHRGVDAVIDAVGFEAKGSVTETVLTALKLEASSGKALRQCIAAVRRGGTVSVPGVYAGFIHGFLFGDAFDKGLTFKMGQTHVQALLPALLEHIGNGDLHPEAIISHRLRLDDAPEGYALFDEKREDCRKVVLRP

Atome Classification :

(23 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NAD_A_7(2DPH)
FDM_PSEPU
[Raw transfer]



NAD_A_9(1KOL)
FADH_PSEPU
[Raw transfer]



NAD_A_9(1KOL)
FADH_PSEPU
[Raw transfer]



MES_A_7(2DQ4)
TDH_THET8
[Raw transfer]



MES_A_7(2DQ4)
TDH_THET8
[Raw transfer]



MES_B_8(2DQ4)
TDH_THET8
[Raw transfer]
21 PsiBlast_CBE 88.0241%-122 - C1 -4CPD - ? -
22 PsiBlast_CBE 87.5541%-122 - C1 -4CPD - ? -
1 PsiBlast_PDB 86.9841%-121 - C1 -4CPD - ? -
26 PsiBlast_CBE 86.7737%-113 - C1 -4JLW - ? -
25 PsiBlast_CBE 86.7637%-113 - C1 -4JLW - ? -
23 PsiBlast_CBE 86.2041%-123 * C1 *4CPD - ? -
2 PsiBlast_PDB 86.0137%-111 - C1 -4JLW - ? -
90 Fugue 85.0538%-103 - C1 -1KOL 11.7 FADH_PSEPU
3 PsiBlast_PDB 84.6136%-107 - C1 -1KOL - FADH_PSEPU -
24 PsiBlast_CBE 84.4737%-112 - C1 -4JLW - ? -
27 PsiBlast_CBE 83.5736%-106 - C1 -1KOL - FADH_PSEPU -
76 HHSearch 82.9537%-100 - C1 -1KOL 11.5 FADH_PSEPU
77 HHSearch 72.2530%-108 - C1 -2D8A - TDH_PYRHO -
4 PsiBlast_PDB 72.2035%-108 - C1 -2DPH - FDM_PSEPU -
28 PsiBlast_CBE 71.9435%-110 - C1 -2DPH - FDM_PSEPU -
8 PsiBlast_PDB 71.3829%-128 - C1 -2NVB - ADH_THEBR -
82 HHSearch 71.0236%-101 - C1 -2DPH 10.8 FDM_PSEPU
13 PsiBlast_PDB 67.9929%-121 - C1 -1BXZ - ADH_THEBR -
12 PsiBlast_PDB 67.6329%-124 - C1 -1YKF - ADH_THEBR -
18 PsiBlast_PDB 66.1028%-126 - C1 -3FPC - ADH1_ENTHI (first) -
85 HHSearch 63.9131%-107 - C1 -2DQ4 3.5 TDH_THET8
5 PsiBlast_PDB 56.8831% -96 - C1 -2DQ4 3.5 TDH_THET8
30 PsiBlast_CBE 55.4531% -95 - C1 -2DQ4 3.4 TDH_THET8