@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PA3767: (2016-02-20 )
MRVTKLISNGKGYPTVKGVRPIIDRSRDPHFMREALAEAEKAAALGEVPVGAVLVREGEIIGRGFNRPISSHDPSAHAEMLAIRMAAAEAGNYRLPGSTLYVTLEPCSMCSGLLVHARIQRLVYGTVEPKSGAVESRGRFFEQEHLNHRVMVEGGVLAEECSQALSAFFRARREAAKKPRED

Atome Classification :

(22 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

IMD_A_5(1WKQ)
GUAD_BACSU
[Raw transfer]



IMD_B_6(1WKQ)
GUAD_BACSU
[Raw transfer]



CHAIN_H_4(2B3J)
TADA_STAAM
[Raw transfer]
-
CHAIN_F_2(2B3J)
TADA_STAAM
[Raw transfer]
-
CHAIN_G_3(2B3J)
TADA_STAAM
[Raw transfer]
-
CHAIN_E_1(2B3J)
TADA_STAAM
[Raw transfer]
-
CHAIN_E_1(2B3J)
TADA_STAAM
[Raw transfer]
-
76 HHSearch 92.9548%-104 - C5 -1Z3A - TADA_ECOLI -
1 PsiBlast_PDB 92.5948%-109 - C5 -1Z3A - TADA_ECOLI -
21 PsiBlast_CBE 91.6648%-111 - C5 -1Z3A - TADA_ECOLI -
2 PsiBlast_PDB 90.7348%-103 - C5 -3OCQ - ? -
23 PsiBlast_CBE 90.5147%-103 - C5 -2B3J 8.3 TADA_STAAM
24 PsiBlast_CBE 90.3647% -96 - C5 -2B3J 8.2 TADA_STAAM
22 PsiBlast_CBE 89.5347% -98 - C5 -2B3J 9.9 TADA_STAAM
3 PsiBlast_PDB 88.9547%-100 - C5 -2B3J 9.2 TADA_STAAM
4 PsiBlast_PDB 88.3048%-104 - C5 -2NX8 - TADA_STRP6 -
77 HHSearch 88.1646% -98 - C5 -2NX8 - TADA_STRP6 -
78 HHSearch 87.9746% -98 * C5 *2B3J 9.2 TADA_STAAM
27 PsiBlast_CBE 85.8346% -97 - C5 -1WWR - TADA_AQUAE -
6 PsiBlast_PDB 85.5046%-107 - C5 -1WWR - TADA_AQUAE -
79 HHSearch 85.1844%-101 - C5 -1WWR - TADA_AQUAE -
26 PsiBlast_CBE 85.0746%-104 - C5 -1WWR - TADA_AQUAE -
28 PsiBlast_CBE 84.4746%-103 - C5 -1WWR - TADA_AQUAE -
25 PsiBlast_CBE 83.0949%-101 - C5 -2A8N - TADA_AGRFC -
5 PsiBlast_PDB 78.9649% -94 - C5 -2A8N - TADA_AGRFC -
80 HHSearch 78.7048% -90 - C5 -2A8N - TADA_AGRFC -
82 HHSearch 72.8429% -87 - C5 -3DH1 - ADAT2_HUMAN -
29 PsiBlast_CBE 55.3445%-121 - C5 -1WKQ 4.1 GUAD_BACSU
7 PsiBlast_PDB 54.1845%-119 - C5 -1WKQ 4.1 GUAD_BACSU